Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54390 442 / 3e-154 ATAHL, AHL HAL2-like (.1) AT5G63980 261 / 5e-83 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G09290 229 / 2e-71 Inositol monophosphatase family protein (.1) AT5G64000 226 / 3e-70 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G63990 214 / 2e-65 Inositol monophosphatase family protein (.1.2) AT4G05090 143 / 2e-38 Inositol monophosphatase family protein (.1) AT3G02870 42 / 0.0005 VTC4 Inositol monophosphatase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011231 [exp] 855 / 0 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10038597 [exp] 523 / 0 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 510 / 0 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10015663 [exp] 213 / 2e-64 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 191 / 2e-57 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10007817 [exp] 144 / 3e-38 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10006739 [exp] 138 / 2e-36 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044900 [exp] 625 / 0 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 621 / 0 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.011G124700 [exp] 512 / 0 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.007G105100 [exp] 253 / 8e-80 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 250 / 6e-79 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.004G033200 [exp] 149 / 3e-40 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.016G011000 [exp] 42 / 0.0005 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10018453 pacid=23162157 polypeptide=Lus10018453 locus=Lus10018453.g ID=Lus10018453.BGIv1.0 annot-version=v1.0 ATGCCTTTAAATTGCTGGAGCTTGGCTGCCAGAGTCCCACGTCTCCAGTTCCCACCACCCTACTCCTTAATCGGACTACGAGGGAAGTACCCATTGAACA AAACCCAGTTCATTCCTCATCGCGTCAAGCTCAAACCGACTTACTCCTCTCTTCACTACTCCTCTGTATCGTCTTCTCCTATCAAATTGGGTTCGAATAC AATGGTGGAGGAGAAGTACTCGAAGGAGCTGGAGATTGCTGTCCGAGCTGTGCAGATGGCTTGCTCACTCTGCCAGAAAGTGCAGCATAACTTGATCACG AAAGCAGAGAATCAAGTTCAGGCCAAGGACGATAATTCTCCCGTTACTGTTGCCGATTGGAGTGTTCAAGCGACTGTGAGCTGGATTCTATGCTCAGCGT TAGGGAGCAGTAACGTCTCAATTATAGCTGAAGAAGATGTTCAATCCTTGTCAAGAACAAGAGCAGCTGGGTTACTAGAGAGTGTAGTTCAGACTGTGAA TGAATGTCTAGCCCAAGCTGCCCGGTTCGGTTTTCAACCACCTGAAGCTCCTCTAGACGCTCTACAGGTCCTTGAATCAATCAGCCGATGTACATCAACC AGATCACCGCAATCTTCAACCTTTTGGGCGCTCGACCCTGTCGATGGGACGCTCGGGTTTGTACGTGGAGATCAGTACGCAGTGGCTCTTTCACTGATAG AAGATGGAGAAGTTGTGGTTGGGGTTCTCGGCTGCCCTAATTACCCGATGAGGAAAGAGGGGCTCCGGTACCACCATCGTTACCACAGGATAGTGTCGAG GCTGACTCCACCGCAGGGCTCCGAGTCTTGGGACAAAGGGTGTGTGTTTTATGCTAGGAAGGGAAGTGGGGTGGCTTGGATGCAGCCGTTGGTGCAGGAA CCGAAGAGCTTGGTGTGGCCGAATTTCACAAAGCGAGTCAGGGTTTCGTCTGTCGATAATCCCGAGTTGGCTACGTTCTGCGAACCTGTTGAGAAGGCCA ATTCTAGCCACTCATTCACTGCTGGACTTGCTCACAGCGTTGGTCTTAGGAAGCAGCCATTGAGAGTGTACAGCATGGTGAAGTACGCGACCATAGCACG TGGAGACGCAGAGGTGTTCATGAAGTTCGCCAGGACCGGTTACAAGGAGAAGATATGGGACCATGCTGCCGGAGTAGTGATCGTACAGGAGGCCGGAGGT GTGGTGACTGACGCAGGTGGGCGGCCGCTGGACTTCTCCGGTGACGGTGTTTACTTAGAAGGGCTTGACAGAGGGATCATTGCTTCGGCTGGAGCTGAGT TGCATGACAAGATCATCCATGCTGTTGATGCTAGCTGGAACTCTTCCAGCTTGTGA
AA sequence Show only first row Show all	>Lus10018453 pacid=23162157 polypeptide=Lus10018453 locus=Lus10018453.g ID=Lus10018453.BGIv1.0 annot-version=v1.0 MPLNCWSLAARVPRLQFPPPYSLIGLRGKYPLNKTQFIPHRVKLKPTYSSLHYSSVSSSPIKLGSNTMVEEKYSKELEIAVRAVQMACSLCQKVQHNLIT KAENQVQAKDDNSPVTVADWSVQATVSWILCSALGSSNVSIIAEEDVQSLSRTRAAGLLESVVQTVNECLAQAARFGFQPPEAPLDALQVLESISRCTST RSPQSSTFWALDPVDGTLGFVRGDQYAVALSLIEDGEVVVGVLGCPNYPMRKEGLRYHHRYHRIVSRLTPPQGSESWDKGCVFYARKGSGVAWMQPLVQE PKSLVWPNFTKRVRVSSVDNPELATFCEPVEKANSSHSFTAGLAHSVGLRKQPLRVYSMVKYATIARGDAEVFMKFARTGYKEKIWDHAAGVVIVQEAGG VVTDAGGRPLDFSGDGVYLEGLDRGIIASAGAELHDKIIHAVDASWNSSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10018453 [exp]	0	1
					Lus10006886 [exp]	2.8	0.7657
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10036963 [exp]	4.5	0.8054
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	8.0	0.7257
AT2G21180			unknown protein		Lus10026283 [exp]	9.8	0.7498
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	15.5	0.7542
					Lus10019563 [exp]	16.2	0.6998
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	17.9	0.7542
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	20.0	0.7542
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	21.3	0.7356
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	21.9	0.7542

Compare expression of checked genes

Lus10018453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.