Plant FIBer expression Database

Lus10018454 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21620 76 / 1e-18 glycine-rich protein (.1.2)
AT1G61255 49 / 4e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011230
[exp]
90 / 1e-23 AT4G21620 81 / 2e-20 glycine-rich protein (.1.2)
Lus10006730
[exp]
72 / 1e-16 AT4G21620 70 / 3e-16 glycine-rich protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G045000
[exp]
75 / 5e-18 AT4G21620 69 / 1e-15 glycine-rich protein (.1.2)
Potri.004G036500
[exp]
68 / 5e-15 AT4G21620 65 / 7e-14 glycine-rich protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10018454 pacid=23162110 polypeptide=Lus10018454 locus=Lus10018454.g ID=Lus10018454.BGIv1.0 annot-version=v1.0
ATGACCACCAACACCAAAGTCTCTACCTTTCTCTTCATCTTCCTCCTCCTCATCTCACCCTCCTTCTCAACCCGGCCGGAACCCGGTTCACCATCCACCC
CGACCGGAGGAGCAGGAGACTTCTTCGGGCCTGGGACTGGGTTCGGGATGCCCGAGTTCGGCAAAGGGTGGGACATGGGAGGAGGTGGGTACGGGTCGGG
TTACGGAGGCCCGAAAGGCGGCCACTCGAAGAGCGGAGTGTATAGGCCTACGGTGGTGTGCAAGGAGAAAGGGCCGTGCTTGAACAAGAAGCTGAGGTGT
CCGGCGAAGTGCTTCACGTCGTATAGCCGCTCCGGGAAGGGGTACGGCGGTGGAGGAGGCGGCGGCGGGTGCACTATGGATTGTAAGAAGAAGTGTGTTG
CTTACTGTTGA
AA sequence
>Lus10018454 pacid=23162110 polypeptide=Lus10018454 locus=Lus10018454.g ID=Lus10018454.BGIv1.0 annot-version=v1.0
MTTNTKVSTFLFIFLLLISPSFSTRPEPGSPSTPTGGAGDFFGPGTGFGMPEFGKGWDMGGGGYGSGYGGPKGGHSKSGVYRPTVVCKEKGPCLNKKLRC
PAKCFTSYSRSGKGYGGGGGGGGCTMDCKKKCVAYC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21620 glycine-rich protein (.1.2) Lus10018454
[exp]
0 1
AT5G28150 Plant protein of unknown funct... Lus10022050
[exp]
6.7 0.7712
AT1G06930 unknown protein Lus10034209
[exp]
10.5 0.7473
AT2G41475 Embryo-specific protein 3, (AT... Lus10019416
[exp]
14.0 0.7348
AT4G01950 ATGPAT3, GPAT3 glycerol-3-phosphate acyltrans... Lus10001449
[exp]
16.6 0.7442
AT4G17720 RNA-binding (RRM/RBD/RNP motif... Lus10030952
[exp]
20.2 0.6894
AT4G09890 Protein of unknown function (D... Lus10005802
[exp]
29.5 0.7127
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Lus10017679
[exp]
29.6 0.7325
AT5G55490 GEX1, ATGEX1 gamete expressed protein 1 (.1... Lus10042450
[exp]
32.1 0.6373
AT4G36850 PQ-loop repeat family protein ... Lus10016795
[exp]
32.2 0.6964
AT5G60900 RLK1 receptor-like protein kinase 1... Lus10024195
[exp]
37.9 0.7287

Lus10018454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.