Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61250 440 / 1e-157 SC3 secretory carrier 3 (.1.2) AT1G11180 426 / 8e-152 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2) AT2G20840 397 / 2e-140 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G03550 376 / 2e-132 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G32050 356 / 9e-125 SCAMP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011229 [exp] 567 / 0 AT1G61250 436 / 1e-155 secretory carrier 3 (.1.2) Lus10038302 [exp] 512 / 0 AT1G61250 442 / 3e-158 secretory carrier 3 (.1.2) Lus10039794 [exp] 395 / 4e-139 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018562 [exp] 388 / 1e-136 AT2G20840 429 / 1e-152 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10033712 [exp] 381 / 5e-134 AT2G20840 416 / 1e-147 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10031627 [exp] 375 / 3e-131 AT2G20840 406 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G045100 [exp] 460 / 3e-165 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2) Potri.004G036600 [exp] 454 / 5e-163 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2) Potri.013G144700 [exp] 396 / 7e-140 AT2G20840 438 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.019G104000 [exp] 394 / 5e-139 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.001G134100 [exp] 375 / 3e-132 AT1G32050 399 / 8e-142 SCAMP family protein (.1) Potri.003G099300 [exp] 369 / 1e-129 AT1G32050 393 / 2e-139 SCAMP family protein (.1) Potri.004G036700 [exp] 161 / 2e-49 AT1G61250 158 / 3e-48 secretory carrier 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04144 [flax] [poplar] SCAMP SCAMP family
Representative CDS sequence Show only first row Show all	>Lus10018455 pacid=23162169 polypeptide=Lus10018455 locus=Lus10018455.g ID=Lus10018455.BGIv1.0 annot-version=v1.0 ATGGCTGGCCGATTCGATCCCAACCCTTTCGACGAAGAGGAAGTCAACCCTTTCTCAAAGGCTCCAGCTTCGAAATCAAGGCTTTCGTCACTGCCTCCGG AACCGGCAGGTTTCGGCTATAATCATGGTGCAACAGTTGACATTCCGATCGATTCATCTACGGATTTGAGAAAGAAAGAGATTGAACTGCAGAGTAAGGA GGCTGAGCTTCGGAGGAGGGAACAAGATGTAAAACGACGGGAAGAGGCAGCTTCCAGAGCCGGAATACAACTGGAGCAGAAGAATTGGCCACCGTTCTTT CCTATCATCCATCATGACATCGCAAATGAAATTCCGATTCACCTGCAAAGGATTCAGTATGTTGCTTTCTCGACATTTTTAGGACTGTCCCTCTGCCTTC TTTGGAATATCATTGCTGTGACAACAGCGTGGATTAAGCACGAAGGGGTGAAGATATGGTTTCTTGCTATCATCTACTTCATATCGGGAGTTCCAGGAGG CTATTTCTTGTGGTATCGCCCACTCTATCGTGCTTTCCGGACTGACAGTGCTCTCAAGTTTGGGTGGTTCTTCTTCTTCTATCTGATCCATATCGGCTTC TGCATCGTAGCTGCGGTTGCTCCTCCCATTTTCTTCAAAGGAAAATCCCTCACAGGCGTTCTCGCTGCAATCGATGTCATAGGAGACAGCCTGCTAGTCG GGATCTTCTACTTTGTCGGGTTCGGTCTCTTCTGCGTCGAAATTATCCTCAGCATTTGGGTTCTTCAGCAAGTATACATGTACTTCCGCGGCAGTGGCAA GGCCGCGGAGGTCAGTCGCGACGCAGCCAGAGGAGCAGTCAGAGCAGCCATTTGA
AA sequence Show only first row Show all	>Lus10018455 pacid=23162169 polypeptide=Lus10018455 locus=Lus10018455.g ID=Lus10018455.BGIv1.0 annot-version=v1.0 MAGRFDPNPFDEEEVNPFSKAPASKSRLSSLPPEPAGFGYNHGATVDIPIDSSTDLRKKEIELQSKEAELRRREQDVKRREEAASRAGIQLEQKNWPPFF PIIHHDIANEIPIHLQRIQYVAFSTFLGLSLCLLWNIIAVTTAWIKHEGVKIWFLAIIYFISGVPGGYFLWYRPLYRAFRTDSALKFGWFFFFYLIHIGF CIVAAVAPPIFFKGKSLTGVLAAIDVIGDSLLVGIFYFVGFGLFCVEIILSIWVLQQVYMYFRGSGKAAEVSRDAARGAVRAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10018455 [exp]	0	1
AT5G20885			RING/U-box superfamily protein...		Lus10019507 [exp]	1.4	0.8197
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	3.0	0.8240
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	4.2	0.7801
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	8.9	0.7916
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	9.8	0.7994
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	9.9	0.7776
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006987 [exp]	10.3	0.6822
					Lus10025480 [exp]	12.4	0.7328
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	22.2	0.7279
AT5G32440			Ubiquitin system component Cue...		Lus10039988 [exp]	23.0	0.7755

Compare expression of checked genes

Lus10018455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.