Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61215 243 / 2e-75 BRD4 bromodomain 4 (.1) AT2G42150 103 / 1e-23 DNA-binding bromodomain-containing protein (.1) AT2G44430 91 / 2e-19 DNA-binding bromodomain-containing protein (.1) AT3G60110 77 / 5e-15 DNA-binding bromodomain-containing protein (.1) AT3G57980 70 / 1e-12 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011227 [exp] 616 / 0 AT1G61215 288 / 7e-93 bromodomain 4 (.1) Lus10010335 [exp] 67 / 9e-12 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10031219 [exp] 65 / 5e-11 AT3G57980 177 / 3e-47 DNA-binding bromodomain-containing protein (.1) Lus10031796 [exp] 64 / 9e-11 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10021861 [exp] 49 / 5e-06 AT2G44430 147 / 6e-39 DNA-binding bromodomain-containing protein (.1) Lus10021860 [exp] 44 / 0.0003 AT2G44430 104 / 1e-24 DNA-binding bromodomain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036900 [exp] 315 / 7e-103 AT1G61215 323 / 1e-105 bromodomain 4 (.1) Potri.003G212500 [exp] 67 / 2e-11 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 66 / 2e-11 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G013600 [exp] 62 / 3e-10 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.001G229300 [exp] 58 / 6e-09 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.009G023100 [exp] 54 / 1e-07 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10018457 pacid=23162152 polypeptide=Lus10018457 locus=Lus10018457.g ID=Lus10018457.BGIv1.0 annot-version=v1.0 ATGGGAGCTGCGACGGCGGCGGCGGCAGGGTGGGGGACTTGGGAGGAATTGCTACTCGGAGGAGCGGTGCTCCGGCACGGGACCCGTGATTGGGACTTGG TGGCGGCGGAGCTCCGGCCCCGATTCGCCTGTCCTTACGATTGCACGGCGGAGGTTTGCAGATCGAAGTATGAGGACTTGCAGAAGCGTTACTCTGGTTG CAAAGCTTGGTTCGAAGAGCTACGAAAGCAGAGGATGTCCGAGCTGAAAAGAGCTCTGGAGGCATCGGAGGGCTCTATTGGATCACTTGAAACAAAGATA GAGACACTCAAGGCGGGGAAGGAGGAAAAGTCTGTACCCGGCCACTATTCGACCAAGACCGAGTCGTCCCCATTACTTTCCGTGAAATCGGAAGGAATGG TGGAGTCTTTGAGCAAGGATCCTTCCAAGGACGGACTATCTGCAGGGAGCTTCACTCAGGAGACCAAGGCGAACTGGTCTCCCGAGAGCCGAATTCCTGC ATCACTTGAGGCCGAGATCAAGCAAGAACCCTCAACCTCTCCAAAAGAGGATCAAAAGGTTGCTGGAGGACCGGTAGGGCTCTTGCTGAAAGGCAGGAGG GGGAAGAGGTCGAAGAGGAAGGTCTGCGGGAAGGAAGACAGTAGCATTGAAGAGATCAGCGATGTGTTAGGCTCGTCCGATGTGTTAGGCAGTTGCGGTG GCGGAGAAGTTGCCATAGGCTCTGTCGACACTGATCGAGTTCCTGATCTCGTTGCAATTTTCGACTCCATTGCTGAGCACAAATGCGCCACTGTCTTCCG CCGAAGGCTTGATAGTCAGAAAAGAGGAAGGTACAAGAAAATGATACTGAGGCACGTAGACGTGGACACAATAAGGAGCAGAATCTCCAGCCTTTCCCTT ACATCAGATAAAGAGCTCTTCAGAGACTTGCTGCTACTAGCCAACAATGCGCTGGTCTTCTACTCGAGGACCACCCGCGAGTACAAGTCCGCAATGCTGC TGCGTGGAATCGTCACCGCGAGCCTGCATCAGCACCTCAAGGACTACTACGTCAGCCAAGCTCTGGCTCCTCCAAGCGATCGAAAGAAGATGCCATCGAA AGGGTCGAATGGTGCTGATGATGGTGTTAAGAAGACCAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGCTGCTAACGATGAAACGGAAAGGGCCT GGCCGGACGAAGAAGGGTGTTCTGATGACGACCATGAGTGGCGATCGAAGATCCGAGGGTGTGATGGCGAAAGGGGGAAGGAAGAGGGCTAGGGTGAAGT GA
AA sequence Show only first row Show all	>Lus10018457 pacid=23162152 polypeptide=Lus10018457 locus=Lus10018457.g ID=Lus10018457.BGIv1.0 annot-version=v1.0 MGAATAAAAGWGTWEELLLGGAVLRHGTRDWDLVAAELRPRFACPYDCTAEVCRSKYEDLQKRYSGCKAWFEELRKQRMSELKRALEASEGSIGSLETKI ETLKAGKEEKSVPGHYSTKTESSPLLSVKSEGMVESLSKDPSKDGLSAGSFTQETKANWSPESRIPASLEAEIKQEPSTSPKEDQKVAGGPVGLLLKGRR GKRSKRKVCGKEDSSIEEISDVLGSSDVLGSCGGGEVAIGSVDTDRVPDLVAIFDSIAEHKCATVFRRRLDSQKRGRYKKMILRHVDVDTIRSRISSLSL TSDKELFRDLLLLANNALVFYSRTTREYKSAMLLRGIVTASLHQHLKDYYVSQALAPPSDRKKMPSKGSNGADDGVKKTKEEEEEEEEEELLLTMKRKGP GRTKKGVLMTTMSGDRRSEGVMAKGGRKRARVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61215		BRD4	bromodomain 4 (.1)		Lus10018457 [exp]	0	1
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	7.7	0.8978
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	14.5	0.8867
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	15.3	0.9025
					Lus10034398 [exp]	16.6	0.9017
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	17.1	0.8943
					Lus10039025 [exp]	21.5	0.8887
AT4G05220			Late embryogenesis abundant (L...		Lus10020066 [exp]	26.6	0.8584
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	27.6	0.8977
AT1G17970			RING/U-box superfamily protein...		Lus10034644 [exp]	30.2	0.8750
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	30.7	0.8933

Compare expression of checked genes

Lus10018457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.