Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61210 667 / 0 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 653 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 507 / 3e-163 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 503 / 6e-162 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 122 / 9e-29 PRL1 pleiotropic regulatory locus 1 (.1) AT5G25150 117 / 9e-27 TAF5 TBP-associated factor 5 (.1) AT3G49660 108 / 3e-25 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 105 / 2e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 103 / 2e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 107 / 3e-23 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011224 [exp] 2108 / 0 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 496 / 2e-161 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 479 / 1e-144 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041006 [exp] 159 / 8e-45 AT1G11160 168 / 5e-49 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 125 / 7e-29 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10006511 [exp] 115 / 2e-26 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 114 / 2e-26 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10007449 [exp] 115 / 1e-25 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10039636 [exp] 107 / 9e-25 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G045500 [exp] 857 / 0 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 533 / 1e-173 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 504 / 4e-163 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 127 / 8e-30 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 125 / 3e-29 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 122 / 5e-29 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.005G148500 [exp] 107 / 6e-25 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 106 / 1e-24 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 103 / 1e-23 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 103 / 1e-22 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10018458 pacid=23162086 polypeptide=Lus10018458 locus=Lus10018458.g ID=Lus10018458.BGIv1.0 annot-version=v1.0 ATGGCGAAGCGTGGATACAAGCTGCAGGAATTTGTGGCGCATTCCACGAATGTGAATTGCTTGAGCATAGGGAAAAAGGCGGGTAGATTGTTCGTTACAG GCGGTGATGATCATCAAGTGAATCTATGGGCGATTGGGAAGCCTACTTCGTTGATGAGCTTATGCGGGCATACTAGTCCAGTCGAATCGGTGGCTTTTGA TACTGCTGAAGTATTGGTTCTTGCTGGGGCTTCAGCTGGTGCAATAAAACTGTGGGATTTAGAAGAGGCAAAGATGGTTCGCACTCTTACTGGACATAAA TCCAACTGCAATGCTGTTGAATTTCATCCATTCGGCGAATTCTTTGCATCTGGTTCCACGGACACAAATTTAAGGGTGTGGGATATCAGAAAGAAAGGAT GCATTCACACGTACAAGGGGCATACTCGAGGCATTAGCACCATCAAGTTTTCTCCTGATGGGCGTTGGGTTGTGTCTGGTGGATCTGATAATGTAGTGAA GGTGTGGGATCTTACTGCAGGAAAGCTTTTACATGACTTTAAATACCATGACGGGCCTATCAGATCTTTAGACTTCCATCCGCTAGAGTTTCTCTTAGCT ACGGGTTCTGCTGACCGAACTGTGAAATTCTGGGATTTGGAAACCTTTGAATTAATTGGATCTGCAAGACCGGAGGCAACCGGAGTGCGTTCAATAGCCT TCCATCCTGATGGAAGGACCCTTTTTTGTGGACTCGATGAAAGTCTAAAGGTATATTCGTGGGAGCCTGTGATTTGTCATGATACAGTGGACATGGGATG GTCTACACTTGGTGACCTCTGCATTCAAGAAGGAAAACTTTTGGGGTGTTCATACTATCGTAATTCTGTTGGAGTTTGGGTGGCAGACATTTCGCTTATT GAGCCATATGGGACCAGTGATGTGCCCGAAGAAGATGACTGCACAGAATCGATGTTCAATATTTCAAAAACTCATTCCAGAGGGATAAACAGTGATATAA AGTCAGTTGTGGGATTGCGCTCTAGGTCTCCTGACATTGATACAAAAGAAATAAAGACCATATATGTTGACTCGACTGGGGGAAATCCTGTTCCTCAGCA AAGAGCGGGCTCACCGAACTGTACGGAAGTTATCTTCCCATCAGACTCAGCTCAAGAATTCCACCCATCTGCAGAGAAGCAAAGCCCTTTTGTTGATCTG ATTTCAGAATCTGATGGACAGACGGTTACTAAGTCGCACATTGTACCAGCTACCGTACCTCCTGAAGAAAAAAGCTCTTTAGATTCTCGAAAGGAAACAA TCACTTTCTCAAGGACTAAACCAGGAATGTTACTTAGACCTGTGAGAAGGGCTTCCAAACATGAAACAGTAGAGCATTCGGTGAATCCTGAACCTGTAAA ACTTGCAAACATAACTACCGACAAAGAGCATGCAGCTGATGTTCCCTTGCAGACCAAGATTGTGTCTGAAGAGGGAGCTTATAAGTCCTGTGAAGAAAAT AAGTCCGTTGCCACTAATGTTGCACAGAAACCCGAGAAAGTTGTTTCACCAGAGAAATCCTCCATTATTGATCTTTGTGTTGAACCAGCTAATACTAAAC CGATCAAATCAGCAAAGAACATTAATGGGGGTGATGAACCATCCAAATTTAAAAGGATGAACTCGGTTAAGATAGTCAACGGAGTTGCTGTGGTGGAAGG CAGAACCCGTTCCCTTGTTGAGAGGTTTGAAAGACGAGAAAAGCCAAGCAACGAAGCTCAGTCAACAAACGGGGATGCTCCTGTTCCAGAAACAATTAAG ATGGCCAAGATAACACCTTCTGTTACTCCGGACGTAGCCCCAGAAGCAGATAAACCCGTAGAAAGGCCAATCAACGAAATTGAGCCAGACAATGGAGATA ATTCTGTTCCAGAAACAATTAAGATGGCCACAATAACACCGGATACAACAGCTCCTTATGTAGCCCCTGAAACAGATGGAACTAAAGAAAGGCTGAGTGA TGAAGACAACGGAGATAATCCCGTTCCCGAAACAATTGAGACTGCCGCAATAGCAAGTGATACAACTCCTGAAGCAGATAGAAGTCCACCAACTCCTCTG TCGGCACCCATTACAGCCTCTGTTGCTGTACCTGAATCAGATAAAGCTCCGATCCGAATACGCAGATCTTCTTCTCACGGGTTACCTGGCAGCCATAGAA ATCTGCCTGAAAGTGAAGGAAGGCCAATCACACCAGCTTCTGCTGTGCCCGAGTCAGATAAAGCTCCGATCCGAATACGCAGATCTTCTTCTCACGGGTT ACCTGGCAGCCATAGAAATCTGCCTGAAAGTGAAGGAAGGCCAATCACACCAGCTTCTGCTGTGCCCGAGTCAGATAAAGCTCCGATTCGAGTACGTAGG TCTTCCCCTCAGAGTGTACCAGGCAGCCAGACAGCCTCTCCTTCTCTACGTGAATCAGATAAAACTCTGCCTCGAGTACGAAGGTCTTCCTCTCACGGTA TAACTGGCATCAGTAGAAATCCAACTCCTCCGTCTAGCACGACATCTCGTGCTGCGACTGAAGTGGTCCGGTCTCATCGAAGAACTTCCAGCATAGGAAC CTTACCGACAGCTGAAAGGAGTAGACCTCGTTACACCTCGTCTGCGAGAAAGTTCTCTCCTGTGCCTGAATCGGAAGCTACCCCTCCAGTTGCATCCAAT AGGACCCTTCACGAAAAAGACGTATCCCCCTTTGCTTCAGTTTTTAAGATACCCCGGGATTTGCCTGCAATGGATAGGACTACAACCCCCATGAAGGAAG AGCCTTTGGTTTCCGTGAAGGATCCTTTCTCTCCTGATTGTGGACCTCCAGTGCCGCCTTCTGACGAAACCCCTAACGAGACTCCAGAAGTCGAAAAATC AGCCGTTACTGCAGTTAACAGGGTGCGTCGCCGAGTACCTGCAATGGATAGAACCACTCCAATCACGAGCTTGAATTTGTCGTTTGTCCACTCTCCAGCA GCATTTGTTAAATCTTATTTTGCCTTGACAGAAGAGAGAGTCACAGGTTTCGCTAAGGGAATCCGATGGACCTTCAACGGCAACATCTACTCCAGCTCAT CCAATTACGAGGACATGATTGACGATCTTATGCAAAACCACGATGCCTTCTTAAGTACGCTTAAATCTCGGTTGACCAAGTTGCAGGTGATTCGACATTT TTGGGAGCGGAACGATATAAAAGGTGCCATCAACGCCTTGAGGAGACTACCTAATCATTCTGTGGGCATTGATGTACAAGCAGACGTGATTAGCGTTCTA ATAGACAAAATGGAGCTCATCACCTTAGATCTATGTTCATCCTTGTTTCCCGTGCTTGTAGGACTTCTCACCAGCAAGATGGAAAGGCATGCAAATGTGT CACTGGAGATGCTGCTGAAGCTCATAGCAGTCTTCGGCCCAACCATACATTCGACCGTCTCAGCTCCTCGTCCAGTCGGGGTTAATCTTCATGCAGAGGA AAGGATAGAGTGCTGTAACCTTTGCTTCATCGAGCTGCAAAAGATCCAGCAAATCCTTCCATCCCTCTTCAGGAAAGGTGGTGTTCTGGCGAAATCTGCC AGGGAGCTCAATCTAGTCCTTCAACGACCGTAA
AA sequence Show only first row Show all	>Lus10018458 pacid=23162086 polypeptide=Lus10018458 locus=Lus10018458.g ID=Lus10018458.BGIv1.0 annot-version=v1.0 MAKRGYKLQEFVAHSTNVNCLSIGKKAGRLFVTGGDDHQVNLWAIGKPTSLMSLCGHTSPVESVAFDTAEVLVLAGASAGAIKLWDLEEAKMVRTLTGHK SNCNAVEFHPFGEFFASGSTDTNLRVWDIRKKGCIHTYKGHTRGISTIKFSPDGRWVVSGGSDNVVKVWDLTAGKLLHDFKYHDGPIRSLDFHPLEFLLA TGSADRTVKFWDLETFELIGSARPEATGVRSIAFHPDGRTLFCGLDESLKVYSWEPVICHDTVDMGWSTLGDLCIQEGKLLGCSYYRNSVGVWVADISLI EPYGTSDVPEEDDCTESMFNISKTHSRGINSDIKSVVGLRSRSPDIDTKEIKTIYVDSTGGNPVPQQRAGSPNCTEVIFPSDSAQEFHPSAEKQSPFVDL ISESDGQTVTKSHIVPATVPPEEKSSLDSRKETITFSRTKPGMLLRPVRRASKHETVEHSVNPEPVKLANITTDKEHAADVPLQTKIVSEEGAYKSCEEN KSVATNVAQKPEKVVSPEKSSIIDLCVEPANTKPIKSAKNINGGDEPSKFKRMNSVKIVNGVAVVEGRTRSLVERFERREKPSNEAQSTNGDAPVPETIK MAKITPSVTPDVAPEADKPVERPINEIEPDNGDNSVPETIKMATITPDTTAPYVAPETDGTKERLSDEDNGDNPVPETIETAAIASDTTPEADRSPPTPL SAPITASVAVPESDKAPIRIRRSSSHGLPGSHRNLPESEGRPITPASAVPESDKAPIRIRRSSSHGLPGSHRNLPESEGRPITPASAVPESDKAPIRVRR SSPQSVPGSQTASPSLRESDKTLPRVRRSSSHGITGISRNPTPPSSTTSRAATEVVRSHRRTSSIGTLPTAERSRPRYTSSARKFSPVPESEATPPVASN RTLHEKDVSPFASVFKIPRDLPAMDRTTTPMKEEPLVSVKDPFSPDCGPPVPPSDETPNETPEVEKSAVTAVNRVRRRVPAMDRTTPITSLNLSFVHSPA AFVKSYFALTEERVTGFAKGIRWTFNGNIYSSSSNYEDMIDDLMQNHDAFLSTLKSRLTKLQVIRHFWERNDIKGAINALRRLPNHSVGIDVQADVISVL IDKMELITLDLCSSLFPVLVGLLTSKMERHANVSLEMLLKLIAVFGPTIHSTVSAPRPVGVNLHAEERIECCNLCFIELQKIQQILPSLFRKGGVLAKSA RELNLVLQRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11160			Transducin/WD40 repeat-like su...		Lus10018458 [exp]	0	1
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10020724 [exp]	2.0	0.9502
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	4.5	0.9321
AT5G43310			COP1-interacting protein-relat...		Lus10011809 [exp]	4.9	0.9193
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10029800 [exp]	7.2	0.9362
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10001216 [exp]	13.5	0.9338
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	14.0	0.9184
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	16.2	0.9217
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	19.2	0.9018
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	20.7	0.9303
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	20.9	0.9120

Compare expression of checked genes

Lus10018458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.