Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20850 563 / 0 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G22130 474 / 9e-159 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 465 / 4e-155 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G13065 406 / 1e-132 SRF4 STRUBBELIG-receptor family 4 (.1) AT4G03390 387 / 3e-124 SRF3 STRUBBELIG-receptor family 3 (.1) AT1G11130 356 / 2e-112 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G14350 325 / 2e-101 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 311 / 6e-96 SRF5 STRUBBELIG-receptor family 5 (.1) AT5G06820 270 / 2e-80 SRF2 STRUBBELIG-receptor family 2 (.1) AT3G58690 232 / 2e-69 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011223 [exp] 1179 / 0 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 609 / 0 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 407 / 4e-132 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 400 / 5e-129 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 375 / 1e-120 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 361 / 6e-113 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 337 / 7e-106 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 332 / 1e-103 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 328 / 7e-103 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037000 [exp] 690 / 0 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 488 / 6e-164 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.004G005301 [exp] 481 / 2e-161 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G045600 [exp] 423 / 2e-138 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.019G103900 [exp] 402 / 8e-130 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 391 / 6e-126 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.001G161600 [exp] 339 / 1e-106 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 332 / 6e-104 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 325 / 2e-101 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.014G001200 [exp] 318 / 9e-99 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018459 pacid=23162174 polypeptide=Lus10018459 locus=Lus10018459.g ID=Lus10018459.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTCAACTGGGTCGTCTTCTTCTTCTCTGTTCTGTATCTTTCCGCTGCTGAAACTGACCCTCGCGATGCTGCTGCAGTGAACAGCTTGTACA TCTCGTTCAACTCGCCGCCATTGCAAGGGTGGACGAGCTTTGGTGGAGATCCTTGTGGGGAGCTATGGGAAGGTGTCAGCTGTGTCTTCTCCAACGTTAC TGCTCTGAAGCTGAATGGGATGAATCTTGGTGGTACATTGGACAATGCCATCGAACTCTTTGATTCCATCATAGAAATTGATCTTAGCAATAACCATATA GGAGGGAGCATTCCAAACAATCTTCCACTTACGTTGAGAAATCTATCTCTAGCTGGCAATCAGTTCAACGGAAGCATTCCGGGGACACTATCGTCTTTGA CTCAATTGGCTGACTTGTTATTGAACAACAATGCTCTAACCGGAGGGATCCCAGATTCGTTTCAACAGCTTACTAGCTTAGTAAACTTAGACTTGTCTTT CAACAACTTGAGCGACATCTTGCCACCAATCGGAAGCTTGCCTTCTCTTACCTCGCTGCATTTGCAGAACAATCAACTTATCGGTACCCTCGATGCTCTT GAGGATCTTCCACTTCAGGACCTGGATGTAGAGAACAATCTATTCTCGGGGCCTATACCTGAGAAGATGATGACCATTCCGAATTTCAGGAGAGATGGAA ATCCATTCAATACAACTATTATCCCTTCTCCACCTGCACCAATGCTTCCATCTCCAGCTCTCCAACCTTCCCCATCTAGCTCTGCAAGTCCACCTTGGAT ATCCGGACTTGGTCCTTCTTCTCCAGAGAAGCAAGGCCCTGAGAAACAAAGTAAGGCCTTGTCATCATCATCTCACAAGAAGACCGTTTTGTTTGCAGCG TGTGGGACAGCAGCATTCGTCCTGCTAGGATTGTGTGTTGGCTTGCCTTTATACTGCAAGAAGAGATACCTTGGACAACACGACCCCGAAAAACTCGAGT TACAGGATCAAGATAATAAGCCTTATCTGCAAGGGGAAAAGAAAATGGTCTCAAATAATTCGATGAATGCTGTATCGTTACTGCCATGCCCTCCTGGAAA GCTCACCACTGCGGTCAAAGAATCTTACAATACTACTGGCTCGAGCGTTTCCTCTTCTGGAGGAGTTTTCACCATTGCAACTCTCCAGCAGTGTACAAAT AGCTTCTCAGAACAGAATTTTGTCGGGGAAGGCCTGCTCGGGCCTGTCTACAGGGCCGAGCTTCCTGATGGAAAGCTTTTGGCAGTGAAGAAGCTGAACA GCATGATATTCAAAGACGACGAGCAGTTTCTTGGTCTTGTCTCTACTGTCTCTACGATCAAGCATCCTAACATTGTGGAGCTTGTGGCACACTGCCTCGA ACATGGGCATAGACTGTTTGTGTATGAGTACTGCGAGAATGGCACGCTGCACGATGCTTTGCATACGGACGAGGAGATGCAACAGAAGCTGTCGTGGAAC AAGCGCATCAGGCTTGCATTAGGATCCGCCAGAGCCCTTCAGTATCTTCATGAAGTCTGCCAACCTCCAATGGTGCACCAAGATTTCAAGTCTGTTAACA TTCTCCTTGACTACCAGTTAGTGGCAAAGGTCTCGGATTGCGGCCTTGGGAGGTTAAAGTCATCAGCTAAGTCAGTCCAGCTCCTGGGTCAAGGGTACAG TGCTCCTGAATTGGAGTCGGGAGGAAGCTACAGCTGCAAGAGCGACGTGTACAGTTTCGGTGTAGTGATGCTTGAACTCCTCACAGGGAGAAAGTCGTAT GACAGCTCGCGTGCTCGAGGGGAGCAGTATTTAGTTCGATGGGCTATCTCCAAGCTCCATGACATCGACTCCTTGTCGAGGATGGTGGATCCTTCGTTGG AGGGCTCGTACCCTGCCAAGTCACTGTCTCGCTTCGCCGATATAATCTCCAGATGCATTCAATCTACTCCCGAGTTCCGGCCAGCAATGTCTGAAGTTGT GCAGGATCTAATGCACATGATATGA
AA sequence Show only first row Show all	>Lus10018459 pacid=23162174 polypeptide=Lus10018459 locus=Lus10018459.g ID=Lus10018459.BGIv1.0 annot-version=v1.0 MAFLNWVVFFFSVLYLSAAETDPRDAAAVNSLYISFNSPPLQGWTSFGGDPCGELWEGVSCVFSNVTALKLNGMNLGGTLDNAIELFDSIIEIDLSNNHI GGSIPNNLPLTLRNLSLAGNQFNGSIPGTLSSLTQLADLLLNNNALTGGIPDSFQQLTSLVNLDLSFNNLSDILPPIGSLPSLTSLHLQNNQLIGTLDAL EDLPLQDLDVENNLFSGPIPEKMMTIPNFRRDGNPFNTTIIPSPPAPMLPSPALQPSPSSSASPPWISGLGPSSPEKQGPEKQSKALSSSSHKKTVLFAA CGTAAFVLLGLCVGLPLYCKKRYLGQHDPEKLELQDQDNKPYLQGEKKMVSNNSMNAVSLLPCPPGKLTTAVKESYNTTGSSVSSSGGVFTIATLQQCTN SFSEQNFVGEGLLGPVYRAELPDGKLLAVKKLNSMIFKDDEQFLGLVSTVSTIKHPNIVELVAHCLEHGHRLFVYEYCENGTLHDALHTDEEMQQKLSWN KRIRLALGSARALQYLHEVCQPPMVHQDFKSVNILLDYQLVAKVSDCGLGRLKSSAKSVQLLGQGYSAPELESGGSYSCKSDVYSFGVVMLELLTGRKSY DSSRARGEQYLVRWAISKLHDIDSLSRMVDPSLEGSYPAKSLSRFADIISRCIQSTPEFRPAMSEVVQDLMHMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	0	1
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	1.0	0.9456
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10016275 [exp]	2.4	0.9309
AT2G44830			Protein kinase superfamily pro...		Lus10042912 [exp]	3.2	0.9097
AT1G04030			unknown protein		Lus10003613 [exp]	3.2	0.9381
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	3.5	0.9267
AT5G44530			Subtilase family protein (.1)		Lus10038416 [exp]	3.9	0.9252
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010892 [exp]	5.7	0.8804
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	6.5	0.9176
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	6.9	0.9146
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	7.7	0.9056

Compare expression of checked genes

Lus10018459 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.