Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 66 / 8e-12 F-box and associated interaction domains-containing protein (.1) AT5G65850 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT4G21240 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT3G52320 49 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT5G10340 49 / 4e-06 F-box family protein (.1) AT1G11270 48 / 5e-06 F-box and associated interaction domains-containing protein (.1.2.3) AT4G38870 47 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT3G10790 47 / 1e-05 F-box associated ubiquitination effector family protein (.1) AT2G23160 47 / 1e-05 F-box family protein (.1) AT1G53790 47 / 1e-05 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011190 [exp] 441 / 1e-152 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10011210 [exp] 348 / 6e-117 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 345 / 2e-116 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10011197 [exp] 332 / 1e-109 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 334 / 3e-109 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 324 / 5e-108 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 324 / 7e-108 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10011186 [exp] 311 / 8e-105 AT3G06240 45 / 3e-05 F-box family protein (.1) Lus10022937 [exp] 267 / 5e-87 AT1G52490 56 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 73 / 7e-14 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 67 / 8e-12 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 64 / 3e-11 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 61 / 5e-10 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 61 / 6e-10 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G037200 [exp] 61 / 7e-10 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.015G013800 [exp] 52 / 2e-07 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.019G062900 [exp] 52 / 4e-07 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 51 / 8e-07 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 51 / 8e-07 AT3G06240 142 / 3e-38 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10018460 pacid=23162221 polypeptide=Lus10018460 locus=Lus10018460.g ID=Lus10018460.BGIv1.0 annot-version=v1.0 ATGCAGTTCAAGTCCGTCTCTAAATCCTGGAAATCGACCATCGAACGAGATTTGAACTTCATCAATTTACACCGCGCACATTCACAATCACGCCCTCCGA GTCTGTTGACTATTGTCCACGATCGGAGAGGTCGTGTCGATTTCTTGTCAGCCGAACTGGACTGTGGCGATGGTGGTGTCAGAGGAGCCAGTGTTCGGAG CACAATGAGAGTGCCAATGCCGAGTCCAGATCTTGGAATTAATTTGGGACCTGTCAAGGGATTGGTCTGTTTCATCGACTATTACTTCCGTGAAGTAATG ATTTACAATGTCACCAACGGACAAGCTGTCACACCATGGATCCGATCGACGGTCTCCAAGACTCAGAAGGGTCGTGAGTACGTGACACCGATATGTGGAT TCGGATTCGACCCCGATACCAGAGAACATAAAGTTATTTTCGTGTGGCATTATTTTCATGGTGCAGCTTGTGAGGTGTTGACCGTAGGGGTGGACGTTAG TTGGAGAACAATTGATGCTGGTGTAATACCTACACGTGATGAATTCTTCGGATATAGGAATACTTATGCCAATGGTTCCATCTATTGGATGTCCCCCCGG TCCGTTCATGAAAACGGCAGGACAGATCCCGAGTTCTTAGTGGCATTCGACGTTGGATCCGAGAAGTTCAGGACGATCAGAATCCCCAAATTTACACTGT CTAGGTGCGGACCGTTAGTCCGCTGCGACTTAATTGAACTGGACGGGTGTCTAACGGTGGTGCGCACCCTCACCGGAAGTTCGCCAACACAGAAGCTATG GAAATTTCACGATTGTAATAAAAATGCAGTTAGCAGAACAAGTGAAAGAGAAGATTGGAGTAAAGTTAGTATTAGAATGCCTGGGTATATAAGACGCCGG ACGCATATTTACTTCCATCCGGTACCGGGGAAAGAGGAGGTTATGATCGTGGAAACGAACCATAAACCGGTTAGTGAGGAATATCGCCTGAATAATGTGA AGCATGCCAGCTTCTGCTGTTACAACAGGATAACCAAGACTTTCAGCAAGTTTGATATCCGAGGAATTCCCTCCCTTTCAGACGAAGCCGAAACTCGTTG TGAATTTTTCGTAGAAAATCTTTTTCGAAAAAATTAG
AA sequence Show only first row Show all	>Lus10018460 pacid=23162221 polypeptide=Lus10018460 locus=Lus10018460.g ID=Lus10018460.BGIv1.0 annot-version=v1.0 MQFKSVSKSWKSTIERDLNFINLHRAHSQSRPPSLLTIVHDRRGRVDFLSAELDCGDGGVRGASVRSTMRVPMPSPDLGINLGPVKGLVCFIDYYFREVM IYNVTNGQAVTPWIRSTVSKTQKGREYVTPICGFGFDPDTREHKVIFVWHYFHGAACEVLTVGVDVSWRTIDAGVIPTRDEFFGYRNTYANGSIYWMSPR SVHENGRTDPEFLVAFDVGSEKFRTIRIPKFTLSRCGPLVRCDLIELDGCLTVVRTLTGSSPTQKLWKFHDCNKNAVSRTSEREDWSKVSIRMPGYIRRR THIYFHPVPGKEEVMIVETNHKPVSEEYRLNNVKHASFCCYNRITKTFSKFDIRGIPSLSDEAETRCEFFVENLFRKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32420			F-box and associated interacti...		Lus10018460 [exp]	0	1
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	25.5	0.7102
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Lus10018719 [exp]	46.8	0.6409
					Lus10015672 [exp]	224.9	0.5881

Compare expression of checked genes

Lus10018460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.