Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61170 50 / 6e-07 unknown protein AT1G11125 47 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011222 [exp] 330 / 2e-113 AT1G61170 76 / 9e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G045700 [exp] 79 / 2e-16 AT1G11125 83 / 3e-18 unknown protein Potri.004G037100 [exp] 73 / 1e-14 AT1G11125 89 / 2e-20 unknown protein Potri.005G086300 [exp] 41 / 0.0006 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018461 pacid=23162097 polypeptide=Lus10018461 locus=Lus10018461.g ID=Lus10018461.BGIv1.0 annot-version=v1.0 ATGGGTTGTTGTCTAGCCACCCCCAAACCTCCCCCTCCTCCCCTATCTTCTTCTCCGGCGAAGTCTGGTGTCAAACTCAAATCAACCCCCGAAAACAGAG CTCCGCCGCCGGCTTACGAGGAGGAAACGGTCAAAGAAGTCCTCGCTTCCGAAACCCCAAACCCCAAGCCTCATTTCTCTCCCGTCCCTCCTCCTCCGCC GCCTCAGCCGGAGCCGGATCTGGTAGAGAAGAAAGAGATTCGAGCGGTGGACCCAGTGCCGGAGGTTTCGCCGGGGGAGAAGGTGGAGCGAAACGTGGAG AAGTATGAGATCTCGGAGCAAGATCCGTCGGAGGTATGTAGTGTCAGTGTGAGTGTCAGCGAGAGCGTGATGTCGACGGTGACCAACGACGACGAAGTGA AACAACCGGTGAACCGGAGATCCCCAGCGGCGAAGAGTAACCGGGCGGGTGCTGCTGCGGATTCGGGTCCGAGGAGGGAGAGATTCGTGGGTAGGTCACC TACTAAGAGATGTGACCGGTCTCCAGCGAAGAGAAACTACTCCAGCAGCGGCAGTGGAGGTCAGATGATGAAGTCGTGTCACAACCCGGTGGGCCCAAGG AAGCCGATGAGACCTGACCCGAGTAGGAGGGACCCTGGGGACAGCTCGGGAAGGAGATCGAGGTCGCCGGCTACTACGCATAGATCTGCGACGACGGCGG CGGGGCAAGGTGGTGGTGTTCGGAACGGGTCGGTCAAGAGGACGGCGAACCAGTCGCCGAGTCGGGTCAGGAAGGATCCACCTCAGGTGAGCGGCGGCGA TGAATCAAGAGAGGGAAAATGGGGAAATGAACATCGTGGCAAAGTTGAAGAAGACGTTAATCCAGCTAGCGAGTCGCTGGAGAACCCGCTGGTTTCACTT GAATGTTTTATATTCCTTTGA
AA sequence Show only first row Show all	>Lus10018461 pacid=23162097 polypeptide=Lus10018461 locus=Lus10018461.g ID=Lus10018461.BGIv1.0 annot-version=v1.0 MGCCLATPKPPPPPLSSSPAKSGVKLKSTPENRAPPPAYEEETVKEVLASETPNPKPHFSPVPPPPPPQPEPDLVEKKEIRAVDPVPEVSPGEKVERNVE KYEISEQDPSEVCSVSVSVSESVMSTVTNDDEVKQPVNRRSPAAKSNRAGAAADSGPRRERFVGRSPTKRCDRSPAKRNYSSSGSGGQMMKSCHNPVGPR KPMRPDPSRRDPGDSSGRRSRSPATTHRSATTAAGQGGGVRNGSVKRTANQSPSRVRKDPPQVSGGDESREGKWGNEHRGKVEEDVNPASESLENPLVSL ECFIFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61170			unknown protein		Lus10018461 [exp]	0	1
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	2.8	0.9076
AT3G18800			unknown protein		Lus10020872 [exp]	3.2	0.9295
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	7.1	0.8628
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	7.9	0.9181
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	8.1	0.9034
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	9.5	0.8942
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	9.9	0.9016
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	10.8	0.9110
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10019214 [exp]	11.5	0.8687
AT3G18800			unknown protein		Lus10033505 [exp]	12.6	0.8995

Compare expression of checked genes

Lus10018461 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.