Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11120 107 / 4e-30 unknown protein AT4G28170 72 / 8e-17 unknown protein AT1G09812 67 / 1e-14 unknown protein AT1G58007 64 / 9e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011221 [exp] 185 / 7e-61 AT1G11120 121 / 8e-36 unknown protein Lus10039796 [exp] 108 / 1e-30 AT1G11120 122 / 3e-36 unknown protein Lus10018564 [exp] 72 / 6e-17 AT1G11120 74 / 1e-17 unknown protein Lus10037361 [exp] 68 / 1e-14 AT1G09812 97 / 2e-26 unknown protein Lus10035787 [exp] 64 / 3e-13 AT1G09812 96 / 8e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037200 [exp] 126 / 8e-38 AT1G11120 147 / 9e-46 unknown protein Potri.011G045900 [exp] 117 / 3e-34 AT1G11120 133 / 2e-40 unknown protein Potri.019G103800 [exp] 113 / 1e-32 AT1G11120 119 / 5e-35 unknown protein Potri.003G006900 [exp] 83 / 5e-21 AT1G09812 105 / 6e-30 unknown protein Potri.004G224200 [exp] 79 / 3e-19 AT1G09812 118 / 4e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018462 pacid=23162175 polypeptide=Lus10018462 locus=Lus10018462.g ID=Lus10018462.BGIv1.0 annot-version=v1.0 ATGGACAAAAATACCCACCATTCTTCTTCTTCAACTATTGTCTCTTCATGGCCGCCGGTGGGATCCCCTGTTCCGCCGGACACAACTTACCAGGAGGCAG AGCATTTGGGGCACTTCGATAACTCGGTCAATGCGGTGTCCTTTGGGTTCGTGGCGACTGCAATCCTCATCTCCATGTTCTTGGTCATGGCCATCTTTGA GAGATTCCTCAGACCAGGGAATCCTTCTTCTAGAGATTCAAGGAATAACGGCGACGTTGAGCTCGGCAAGCTCCGATACCCTTCTCCCAAAATGACGGTA TATGCAAATGGAGTGTCTGTGTTGATGCCTGGAGACAAAATCCCTACTTTCATAGCACATCCGGTGCCTGCCCCTGTTGTTGCTGCTCTCGAGCCAGATC CTCTGAGACCTCCTCCTCGAGAGAGAGCGCCGTGTGAAAAAAATGAAAATTGA
AA sequence Show only first row Show all	>Lus10018462 pacid=23162175 polypeptide=Lus10018462 locus=Lus10018462.g ID=Lus10018462.BGIv1.0 annot-version=v1.0 MDKNTHHSSSSTIVSSWPPVGSPVPPDTTYQEAEHLGHFDNSVNAVSFGFVATAILISMFLVMAIFERFLRPGNPSSRDSRNNGDVELGKLRYPSPKMTV YANGVSVLMPGDKIPTFIAHPVPAPVVAALEPDPLRPPPRERAPCEKNEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11120			unknown protein		Lus10018462 [exp]	0	1
AT1G11120			unknown protein		Lus10011221 [exp]	9.9	0.7241
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10007223 [exp]	11.3	0.7238
AT4G21500			unknown protein		Lus10011256 [exp]	12.3	0.7398
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10011565 [exp]	12.6	0.7390
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10027447 [exp]	13.9	0.7110
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	14.0	0.7071
AT5G47920			unknown protein		Lus10002566 [exp]	19.7	0.7054
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	26.9	0.7017
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	28.0	0.6889
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10005803 [exp]	28.1	0.6820

Compare expression of checked genes

Lus10018462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.