Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61150 366 / 1e-129 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT4G09300 209 / 3e-68 LisH and RanBPM domains containing protein (.1) AT1G11110 204 / 3e-65 LisH and RanBPM domains containing protein (.1) AT1G35470 44 / 8e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 43 / 0.0001 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011219 [exp] 466 / 4e-169 AT1G61150 392 / 6e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10004152 [exp] 62 / 2e-11 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10005633 [exp] 61 / 5e-11 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10001544 [exp] 53 / 8e-08 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 48 / 4e-06 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10016865 [exp] 40 / 0.0004 AT4G21520 95 / 7e-24 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046200 [exp] 415 / 4e-149 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.004G037600 [exp] 380 / 2e-135 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.005G233000 [exp] 63 / 6e-12 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.002G029700 [exp] 62 / 2e-11 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.019G080800 [exp] 50 / 4e-07 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 47 / 4e-06 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [flax] [poplar] CLTH CTLH/CRA C-terminal to LisH motif domain CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10018464 pacid=23162159 polypeptide=Lus10018464 locus=Lus10018464.g ID=Lus10018464.BGIv1.0 annot-version=v1.0 ATGTCACTGTTCTGGATTGTTATTCGTCATCTTGCAGAGATCGAGGCGATGGCTGATTCAAAAAAGGTGATCACAAGGGAAGAGTGGGAAAAGAAGCTCA ATGACATCAAAATTCGGAAAGAAGATATGAATAAGTTGGTGATGAACTTCTTTGTCACAGAGGGTTATGTTGATGCTGCTGAGAAGTTCCAGCGAGAATC TGGAACAGAACCAGGTATAGATCTCGGAACGATTACTGATCGCATGGCTGTTAAGAAAGCAGTGCAGTGTGGAAATGTCGAGGATGCAATTGAGAAAGTC AATGATCTAAATCCAGAGATACTGGACACCAACCCGCAACTGTTCTTCCATCTTCAGCAGCAGAGGCTTATTGAGCTTATCCGGAATGGTAAAATAGAAG AAGCCTTGGAGTTCGCTCAGGAAGAGCTTGCACCTAGAGGGGAAGAAAACCAAAGCTTCTTGGAAGAGCTGGAGAGAACAGTTTCGCTACTGGCTTTCGA CGACTTATCAAAGTGCCCGGTTGGTGAACTCCTCGACATCTCGCAGCGGCTGAAAACCGCAAGCGAAGTCAATGCAGCTATCCTCACCAGCCAGAGTCAC GAAAAGGAACCAAAGCTCCCCATCTTGTTGAAAAGGCTGATATGGACACAGAACAAACTCGACCAGAGAGCTGCCTACCCTAGAATCAACGACTTGTCTA CCGCCACGCTTGAAGACTCCGGAGTCTGA
AA sequence Show only first row Show all	>Lus10018464 pacid=23162159 polypeptide=Lus10018464 locus=Lus10018464.g ID=Lus10018464.BGIv1.0 annot-version=v1.0 MSLFWIVIRHLAEIEAMADSKKVITREEWEKKLNDIKIRKEDMNKLVMNFFVTEGYVDAAEKFQRESGTEPGIDLGTITDRMAVKKAVQCGNVEDAIEKV NDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVSLLAFDDLSKCPVGELLDISQRLKTASEVNAAILTSQSH EKEPKLPILLKRLIWTQNKLDQRAAYPRINDLSTATLEDSGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	0	1
AT1G28120			unknown protein		Lus10030429 [exp]	1.0	0.9261
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	4.2	0.8630
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	4.6	0.8609
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	5.3	0.8336
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	6.5	0.8283
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	8.5	0.8114
AT1G52530			unknown protein		Lus10003678 [exp]	10.2	0.8222
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	11.8	0.8024
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10018356 [exp]	11.8	0.7777
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	12.1	0.8282

Compare expression of checked genes

Lus10018464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.