Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61140 545 / 4e-175 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G11100 527 / 4e-167 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G50410 499 / 5e-159 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 476 / 1e-149 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G43530 228 / 9e-61 Helicase protein with RING/U-box domain (.1) AT1G05120 217 / 2e-58 Helicase protein with RING/U-box domain (.1) AT5G22750 218 / 6e-58 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT3G16600 155 / 4e-39 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT5G05130 157 / 7e-39 DNA/RNA helicase protein (.1) AT1G02670 143 / 6e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011211 [exp] 1069 / 0 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 491 / 2e-156 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 440 / 2e-131 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10043365 [exp] 232 / 2e-62 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10030044 [exp] 219 / 2e-58 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10041156 [exp] 218 / 1e-57 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10039001 [exp] 199 / 3e-52 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10027296 [exp] 131 / 2e-32 AT5G05130 470 / 1e-159 DNA/RNA helicase protein (.1) Lus10019523 [exp] 124 / 3e-31 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037700 [exp] 643 / 0 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 622 / 0 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 525 / 1e-168 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.014G154600 [exp] 221 / 1e-59 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.003G083400 [exp] 217 / 6e-58 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G189400 [exp] 215 / 6e-57 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 186 / 5e-48 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 179 / 6e-46 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.014G005701 [exp] 150 / 2e-42 AT1G50410 155 / 3e-45 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.006G035700 [exp] 139 / 2e-33 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018465 pacid=23162224 polypeptide=Lus10018465 locus=Lus10018465.g ID=Lus10018465.BGIv1.0 annot-version=v1.0 ATGCATGCTGGTTGCGGGTGTGGTGGTGACTTGGAAGAAGTGGGAGTGGATGAAGAAGAAGAGGATGAAGGGATTGAAGAAGAAGAGGATGAAGGGATTG AAGAAGAGGATGATGAGGATGAAGAGATTAAAGAAGAGGATGAAGAAGAGGATGAAGAGATTAAAGAAGCGGAATTTGAGGATGGTATCGGATTTATCGA CGTTATGATGGCGTCGGACGGAAACTCTGGGATGCAGCTGCAAGGAGAAGGAGGAGGAGGAGGTATAGTTTCTGCTGACTTTGACTTGGACGATATATCC ATTGATCTCGACATGGTGATGGGGATTCTCGAAGAGTCTAGTCCTCAATCTCAACAGGAGGATGCCCAGAGTTTAGTGGATAATGGATTGCAAGGTGGAT TAATAGCTGATTCGGGGAATCAAATGATCCAGCTTCCAGCTTCTGGTGAGACTTCGCCATCAGCTTATGAGACTGATTCACGAGGTGTTCTCTATGAGCC TTGGATGGACAATTCGGGTTTTGGTTTGGTATGTGATGGGGCATTGGTTGAGAATGGTAATGGGGTTCCAGGGTATGGGAATGGAGCTGAACAGCCTATG GATATGGCACTGGCGTGTGGATCCGCCCACGAACAGCCTATGGATATGGCACTGGAGGGTGGATCTGCCCCTTTTCAGATTGCGTATCCTTCTACATCTC CGATCTCCCACAACTCTGATCTTAGTAGTGATTTAGATGGGCTTTACTCCGGTGGTGCAGATTTTTCACAGTATGACGTATCTGGTGAGTTCGATTCTGA AAAGTTCCCTGGCGATGGATCAATTACGGTCGATGAGATGATGGGTGATTTGGGTGTGTATTCAATTGATAACTTTGAAGGCTCTAGTGTTAAGGGGTTC GGATTTGAAGACCATGGTAAACAAGAATCACGTGCCAATTTCAAATTTGGGTCTTGTGTTTACGAGGGAGGACACGGAGAAACGTCAATGCGACCTTGCA GTTCCGTGAAATTGGAAACTTCGGTACGACCTTGTAGTTCTGGCACATTGGAGCCCAGGTCTAGCGGGAAGCCACCAGTTTCTGTTCATCCAAAGCCGTT CACGTCTGTTCCTGCAATAATAAGCCGTAGTAGCAAAATCAAGGCAGAGAAAGGCTATTCAAGAGTTGCACCAAGCGGTTCTGAACTCCCTGGCGTTTCC TATCCCACCAATACTAGACACATGAATTCAAATGTCATGGACCAGCAGTTTTCTAGTGTACAGCGATATAGAAAACTCAACAACTACTTGCATAGGCATG ATGGAATTATTTCTCAAAAGACCTTTGCTTCTCCATTCTCTCGAGTCAGTCCAGAGTCAACTCACAGTAATTCATCAGGTAGCAGATCTGTTGTGGATGA CGACTCTGACATCTGTATTCTTGAAGATATCAGTCAACCTCCTCGCTTAAGTCAGTTTCAACCACTTCAGAAGCCCACCATCTCGATGATGCCTGCATCA CCCGCTAGTAGCACCGTTAGTTACAGTGATCCTCCTCATTACACTGGAGCTGGAGGCAGGCTTAGGACCTGCGATGAGCGAGTCCTTTTTCGAGCTGCAT TGCAGGATCTTAATCAACCAAAGGCTGAAGCAAATCCACCTGATGGCTTGATGGCAATACCTCTAATGAGACATCAGCGAATTGCTTTGTCATGGATGGC TCAAAAGGAAACATCTGGGTTTAATTGTTTAGGAGGAATTCTTGCAGATGATCAGGGTTTGGGAAAGACGATATCAACCATTGCTCTCATACTCAAAGAA AGGGCACCATGTCGTGGAGTCGATGTAAAAGTTGTTAGGAAAGAAGAGTGTGAGACCTTGGATTTAGATGAAGACGATGAAGATGCTGATTTCAAAGAAA TAAAAAAGGAAAGTGGTGATTGTCAAGTTACATCCAATCATCGAAATGCAACGAAGGATGCAAATGTTCATGGTACTTCCAAAGGAAGACCAGCTGCTGG GACTCTGATTGTTTGTCCTACTAGTGTTCTTCGACAATGGGCTGAGGAGTTGCATAAGAAGGTAACTGCGAAAGCAGATCTCTCGGTCATGGTGTATCAT GGTAGCAGTCGAACAAAAGATCCTCACGAGCTTGCACAAAATCCAGCTAAAGGTTACAGAAAGTTACAAGCTGTCTTGAAGACAGTAATGCTTCGTCGAA CCAAAGGTACGCTGCTTGATGGAGAGCCAATCATCAACTTACCCCCGAAGACAATAGAATTGAAAAAAGTTGATTTTTCAGATGAAGAGCGCTGTTTCTA TTCCAGACTCGAGAATGATTCACGTGCACAGTTCAAGGAGTACGCTGCGGCAGGAACAGTGAGACAAAACTACGTTAACATCTTGCTGATGCTCCTGCGT CTTCGTCAAGCATGCGATCACCCGCTTCTCGTTAGAGGCTATGAATCAGTTGCATTGGGGAAATCCTCAACTGAACTGGCTATGTCGCTTCCTCATGAAA AGCGCTTATCCCTTCTCAATTGCTTAGAGGCATCTTTGGCGATCTGTGGCCTCTGTAATGATCCTCCTGAAGATGCAGTTGTGTCTGTTTGTGGTCATGT TTTCTGCAATCAATGCATATTGGAACATCTTAACGGAGACGACAGTCAATGCCCTACTCCTCATTGCAAAACTCGGCTAAATGCTTCTTCAGTGTTCTCC AAAGCCATTTTGGACACTTCCCGTGTTGACCAGATTGTCGAGTTTTCTCCATCTGGAACCATTAGCGAAGTCAACTCCCGTCCTGAAGGTGGTGCATATG ATTCCTCGAAAATCAAGGCGGCTCTCACTGTCCTGGAGTCTCTTTCGAAGCCAAAACTGCCTGCTGTAAAATGTGAAGAGAATTCGGTTAGTCATGATAC ATTGCCTCAAGACTCATCTGGTTGCGGAAATTCTGCGGATCTCAGTAATGATGGGAATGGCAAGGTTGCTGGCGAGAAGGCTATAGTATTTTCGCAGTGG ACGAGGATGTTAGATTTGCTAGAAGCTTGCCTTAAAACTTCTTCCATTCAGTACCGAAGACTCGACGGGACAATGTCAGTAGCCGCTAGAGAAAAAGCTG TCAAGGACTTCAACACACTACCAGAGGTTACTGTCATTATCATGTCTCTCAAAGCCGCTAGTCTCGGATTGAACATGGTTGCTGCTTGCCACGTCATCCT TCTTGACCTATGGTGGAACCCTACGACAGAAGATCAAGCCATCGACAGAGCGCATCGTATCGGCCAGACACGTCCCATTACCGTTCTTAGGTTAACTGTC AAGGACACTGTCGAAGATCGAATTTTAGCATTACAGCAAAAGAAGAGACAGATGGTCTCATCGGCATTTGGGGAGGACGGAGATGGCAGCGAGCAGACTC GACTAACCGAGGAGGACCTGAAATATCTGTTCATGGGTTGA
AA sequence Show only first row Show all	>Lus10018465 pacid=23162224 polypeptide=Lus10018465 locus=Lus10018465.g ID=Lus10018465.BGIv1.0 annot-version=v1.0 MHAGCGCGGDLEEVGVDEEEEDEGIEEEEDEGIEEEDDEDEEIKEEDEEEDEEIKEAEFEDGIGFIDVMMASDGNSGMQLQGEGGGGGIVSADFDLDDIS IDLDMVMGILEESSPQSQQEDAQSLVDNGLQGGLIADSGNQMIQLPASGETSPSAYETDSRGVLYEPWMDNSGFGLVCDGALVENGNGVPGYGNGAEQPM DMALACGSAHEQPMDMALEGGSAPFQIAYPSTSPISHNSDLSSDLDGLYSGGADFSQYDVSGEFDSEKFPGDGSITVDEMMGDLGVYSIDNFEGSSVKGF GFEDHGKQESRANFKFGSCVYEGGHGETSMRPCSSVKLETSVRPCSSGTLEPRSSGKPPVSVHPKPFTSVPAIISRSSKIKAEKGYSRVAPSGSELPGVS YPTNTRHMNSNVMDQQFSSVQRYRKLNNYLHRHDGIISQKTFASPFSRVSPESTHSNSSGSRSVVDDDSDICILEDISQPPRLSQFQPLQKPTISMMPAS PASSTVSYSDPPHYTGAGGRLRTCDERVLFRAALQDLNQPKAEANPPDGLMAIPLMRHQRIALSWMAQKETSGFNCLGGILADDQGLGKTISTIALILKE RAPCRGVDVKVVRKEECETLDLDEDDEDADFKEIKKESGDCQVTSNHRNATKDANVHGTSKGRPAAGTLIVCPTSVLRQWAEELHKKVTAKADLSVMVYH GSSRTKDPHELAQNPAKGYRKLQAVLKTVMLRRTKGTLLDGEPIINLPPKTIELKKVDFSDEERCFYSRLENDSRAQFKEYAAAGTVRQNYVNILLMLLR LRQACDHPLLVRGYESVALGKSSTELAMSLPHEKRLSLLNCLEASLAICGLCNDPPEDAVVSVCGHVFCNQCILEHLNGDDSQCPTPHCKTRLNASSVFS KAILDTSRVDQIVEFSPSGTISEVNSRPEGGAYDSSKIKAALTVLESLSKPKLPAVKCEENSVSHDTLPQDSSGCGNSADLSNDGNGKVAGEKAIVFSQW TRMLDLLEACLKTSSIQYRRLDGTMSVAAREKAVKDFNTLPEVTVIIMSLKAASLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPITVLRLTV KDTVEDRILALQQKKRQMVSSAFGEDGDGSEQTRLTEEDLKYLFMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	0	1
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	1.0	0.8634
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	2.0	0.7738
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	3.5	0.7583
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	3.6	0.7092
AT2G30480			unknown protein		Lus10034450 [exp]	4.9	0.6813
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	7.1	0.7210
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	7.5	0.7296
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	9.8	0.7498
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	11.0	0.7638
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	13.0	0.7072

Compare expression of checked genes

Lus10018465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.