Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11090 382 / 2e-134 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 249 / 2e-82 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 236 / 5e-77 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 234 / 2e-76 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 229 / 3e-74 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 228 / 7e-74 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 227 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 227 / 3e-73 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G47630 226 / 9e-73 alpha/beta-Hydrolases superfamily protein (.1) AT5G14980 218 / 9e-70 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011212 [exp] 513 / 0 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 255 / 1e-84 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 257 / 1e-81 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 234 / 2e-75 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10017600 [exp] 226 / 2e-73 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 227 / 3e-73 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 226 / 2e-72 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017601 [exp] 224 / 7e-72 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10034331 [exp] 220 / 5e-70 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046500 [exp] 406 / 6e-144 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 244 / 2e-80 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 237 / 1e-77 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 234 / 8e-76 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 232 / 1e-74 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G129000 [exp] 226 / 5e-73 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 206 / 3e-65 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.010G222300 [exp] 202 / 8e-64 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 203 / 3e-63 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 199 / 1e-62 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10018466 pacid=23162163 polypeptide=Lus10018466 locus=Lus10018466.g ID=Lus10018466.BGIv1.0 annot-version=v1.0 ATGGTCCATGGATACGGCAACGACTGCAGCTGGACGTTCCAATCCACTGCCATCTTCCTAGCGAAGAATGGCTTCGCCTGCTTCAGCCTCGACATCGAAG GCCACGGCAGATCCCAAGGTTTGAAAGCCTATGTTCCTAATATTGACCTCGTCGTTGATGACTGCTCGTCGTATTTCGCAACCGTGAAACGAGATCCCTT GTTCGCCGGCGTACGCTCCTTCCTCTACGGCGAATCGATGGGCGGCGCCATGTGCCTCCTCCTCCACTTCGCTAACCCTAGCTCGTTCGACGGCGCCGTG TTGGTATCTCCGATGTGCAGAATCGCGGACGAGATCAAACCAAAGTGGCCGATCCCGGAGATATTGACCTTCGTGGCGAGATTTCTCCCAACGCTGGCGA TCGTGCCGTCGGGAGACGTGCTGAGGAGCTCGGTGAAGGTGAAGGACAAGCTGGAAGTGGCGGAGATGAATCCGACGAGGTACAGAGGGAAGCCGAGGCT GGGGACTGTCCTGGAGCTGATTCGAGTGACGGATTGTCTAGCGAAGAAGCTAGGCGATGTGAGCTTGCCGTTCATGGTCTGCCACGGGAGCGCGGACGTG GTGACGGATCCGAACGTGAGCAGGTCGCTGTACGAAGAAGCCAAGAGCGAGGACAAGACGGTGAAGATCTACGACGGGATGATGCATTCGTTGCTGTTCG GGGAAACGGACGAGAACATCGAGGTTGTTCGTCGGGATATTCTGGATTGGATCAGCGATAGATGCCGAAGATAG
AA sequence Show only first row Show all	>Lus10018466 pacid=23162163 polypeptide=Lus10018466 locus=Lus10018466.g ID=Lus10018466.BGIv1.0 annot-version=v1.0 MVHGYGNDCSWTFQSTAIFLAKNGFACFSLDIEGHGRSQGLKAYVPNIDLVVDDCSSYFATVKRDPLFAGVRSFLYGESMGGAMCLLLHFANPSSFDGAV LVSPMCRIADEIKPKWPIPEILTFVARFLPTLAIVPSGDVLRSSVKVKDKLEVAEMNPTRYRGKPRLGTVLELIRVTDCLAKKLGDVSLPFMVCHGSADV VTDPNVSRSLYEEAKSEDKTVKIYDGMMHSLLFGETDENIEVVRRDILDWISDRCRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10018466 [exp]	0	1
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10011212 [exp]	1.0	0.9107
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	8.5	0.8764
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	8.7	0.9094
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	10.7	0.9049
AT4G14615			unknown protein		Lus10006639 [exp]	15.0	0.9032
AT4G38225			unknown protein		Lus10013843 [exp]	15.2	0.8880
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	15.3	0.8739
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	15.9	0.8145
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10033574 [exp]	16.1	0.8530
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	16.8	0.8910

Compare expression of checked genes

Lus10018466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.