Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11080 669 / 0 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT4G15100 625 / 0 SCPL30 serine carboxypeptidase-like 30 (.1) AT1G61130 622 / 0 SCPL32 serine carboxypeptidase-like 32 (.1) AT5G08260 465 / 3e-161 SCPL35 serine carboxypeptidase-like 35 (.1) AT3G17180 435 / 2e-149 SCPL33 serine carboxypeptidase-like 33 (.1) AT5G23210 430 / 2e-147 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT4G30610 423 / 5e-145 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 417 / 1e-142 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 407 / 2e-139 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 406 / 3e-138 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011213 [exp] 957 / 0 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10017391 [exp] 441 / 8e-152 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10010190 [exp] 440 / 3e-151 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 436 / 8e-150 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10015489 [exp] 428 / 1e-146 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 427 / 4e-146 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010191 [exp] 416 / 8e-142 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017392 [exp] 412 / 2e-140 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10015382 [exp] 403 / 1e-136 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046600 [exp] 781 / 0 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.004G037800 [exp] 768 / 0 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.007G072300 [exp] 457 / 3e-158 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.005G091700 [exp] 454 / 7e-157 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.006G183200 [exp] 433 / 6e-149 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G091800 [exp] 432 / 2e-148 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.010G149400 [exp] 423 / 9e-145 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1) Potri.018G105700 [exp] 420 / 4e-144 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120100 [exp] 411 / 3e-140 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 403 / 2e-137 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10018467 pacid=23162202 polypeptide=Lus10018467 locus=Lus10018467.g ID=Lus10018467.BGIv1.0 annot-version=v1.0 ATGACAGCTTTACTGCCTTCGATCATTGTTGCTCTAGTATATCTGATACCTGTTTCCAGCGCCAGACAAGGGGAATGGAGTATTCAGAAGAAATTGAACA CATTGGTCAATGATCACCTTGTAACTAATTTGCCTGGACAGCCTGATGTTAACTTCAAGCACTATGCTGGCTTTCTTCCTGTCAATGAAACAAGTGGCAG GGCACTGTTTTACTGGTTCTATGAGGCCACCAATCAATCAGATGAAAAACCTTTAGTCCTGTGGCTTAATGGAGGTCCAGGATGCTCTTCTGTGGGTTAT GGAGCAACTCAAGAGATTGGCCCTTTCATAGTGGACGCTAATGGACATGGGATTAAATATAATCCTTTCTCATGGAACATAGAGGCCAACATGCTATTCC TGGAATCTCCTGTTGGAGTTGGATTTTCTTACACGAACACCAGTACGGATTATATTAATCTGGGAGATGAGCTTACAGCTAATGATGCTTATGCTTTCCT GCACAAATGGTTTGTCAAGTTCCCATCTTACCGAACTCGGACATTCTACATAGCAGGAGAAAGTTATGCAGGAAAGTACATCCCGGAGCTCGCTGAGTTT ATACTTGACAGGAACAACGACCCTTCTCTTCATATTGACCTCAAGGGAGTTCTGATGGGTAATCCTGAAACGAACGATGCTGAAGACTGGAGAGGAATGG TGGACTATGCATGGAGCCATGCAGTGATATCAGACGAGACCCACAGGGCCATAATGCAGAGCTGCAACTTCAGCAGCGATGACACCTGGAGCAACAACGA TTGCAGCGACTCAGTCGACGAATTGCTCAGGCAGTACAAGGAGATCGACATCTACAGCTTATACACGTCAGTCTGTGTTGGTGACTCGGCGAGTTCGGAT CAAAAGTCCACGCAGGTTATGTTCAAACATGGTTCGAAAATGCTGCCAAGAATAATGGGAGGGTATGATCCATGTCTGGATGACTACGCAAAGGCTTTTT ACAACAGAGCAGATGTTCAGAAGGCCCTCCATGTGAGCGATGGCCACCGTCTCAGGAACTGGAGCATATGCAATGAAAAGATATTCAATGAGTGGAAGTA CTTAAAGCCATCAGTCCTTCCTATCTACACAAAACTCATTGCAGCTGGAATCAGGATCTGGGTCTACAGTGGGGACACGGACGGTAGGGTGTCGGTGCTA TCGACTAGATACAGCATAAGTGCATTGGGGCTGAAGATAACAAAGTCATGGAGGCCATGGTACCACCAAAGGCAAGTGAGTGGGTGGTTTCAAGAATACC AAGGCCTCACTTTCGCCACTTTTCGAGGCGCTGGCCATGCCGTCCCTGTCTTCAAACCCAGCGAAACCCTCGCCTTTTTCTCCGCCTTCCTCCTCGGCCA GACTCCCCCTTCCGCCCGATAA
AA sequence Show only first row Show all	>Lus10018467 pacid=23162202 polypeptide=Lus10018467 locus=Lus10018467.g ID=Lus10018467.BGIv1.0 annot-version=v1.0 MTALLPSIIVALVYLIPVSSARQGEWSIQKKLNTLVNDHLVTNLPGQPDVNFKHYAGFLPVNETSGRALFYWFYEATNQSDEKPLVLWLNGGPGCSSVGY GATQEIGPFIVDANGHGIKYNPFSWNIEANMLFLESPVGVGFSYTNTSTDYINLGDELTANDAYAFLHKWFVKFPSYRTRTFYIAGESYAGKYIPELAEF ILDRNNDPSLHIDLKGVLMGNPETNDAEDWRGMVDYAWSHAVISDETHRAIMQSCNFSSDDTWSNNDCSDSVDELLRQYKEIDIYSLYTSVCVGDSASSD QKSTQVMFKHGSKMLPRIMGGYDPCLDDYAKAFYNRADVQKALHVSDGHRLRNWSICNEKIFNEWKYLKPSVLPIYTKLIAAGIRIWVYSGDTDGRVSVL STRYSISALGLKITKSWRPWYHQRQVSGWFQEYQGLTFATFRGAGHAVPVFKPSETLAFFSAFLLGQTPPSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10018467 [exp]	0	1
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	3.7	0.7927
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	4.6	0.7958
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10014172 [exp]	6.0	0.7917
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	12.6	0.7471
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	14.1	0.7244
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	18.8	0.7098
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	19.1	0.7219
AT1G06980			unknown protein		Lus10038171 [exp]	19.1	0.7131
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10041723 [exp]	21.8	0.6764
AT1G04360			RING/U-box superfamily protein...		Lus10000710 [exp]	21.9	0.6946

Compare expression of checked genes

Lus10018467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.