Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60620 493 / 7e-175 ATRPAC43 RNA polymerase I subunit 43 (.1) AT1G60850 449 / 2e-157 AAC42, ATRPAC42 DNA-directed RNA polymerase family protein (.1.2.3) AT2G15430 102 / 4e-24 NRPE3A, NRPD3, NRPB3, RPB35.5A, RBP36A DNA-directed RNA polymerase family protein (.1) AT2G15400 95 / 1e-21 NRPE3B, RBP36B DNA-directed RNA polymerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011214 [exp] 753 / 0 AT1G60620 523 / 0.0 RNA polymerase I subunit 43 (.1) Lus10002823 [exp] 108 / 2e-26 AT2G15430 541 / 0.0 DNA-directed RNA polymerase family protein (.1) Lus10027873 [exp] 107 / 7e-26 AT2G15430 539 / 0.0 DNA-directed RNA polymerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369500 [exp] 509 / 0 AT1G60620 508 / 0.0 RNA polymerase I subunit 43 (.1) Potri.009G097600 [exp] 110 / 3e-27 AT2G15430 547 / 0.0 DNA-directed RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0509 [flax] [poplar] RBP11-like PF01193 [flax] [poplar] RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain CL0509 [flax] [poplar] PF01000 [flax] [poplar] RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
Representative CDS sequence Show only first row Show all	>Lus10018468 pacid=23162150 polypeptide=Lus10018468 locus=Lus10018468.g ID=Lus10018468.BGIv1.0 annot-version=v1.0 ATGGGTCAATCGGAGAAGAAAGAAGCGGAAAACAACGGCGGCGAGCAGAGTAATAATAAAGCTAAGAAGTTCAACATAATGGATTTGCCCGACCTCCCTA TGGGCATTCTCCCGCCGCACCTCCATCAACAGAAGACTCGCGTGGCTTGCAAACCCGACGCTCCTATCCATACTGATAATATCACGTACAGTGGTGCATA CCATTCCCTTGGGGTCGATAACAGTATTCACTTGGACTCCTTCCGCAACGATTTCAAAGTCGAAATCATCCGGCTCAACAAGGACGATATGGAGTTCGAC ATGATCGGTATCGATCCAGCTCTTGCAAATGCCTTCCGGAGAATCCTAATTGCTGAGGTACCTTCAATGGCAATCGAAAAAGTTCTCGTGGCATACAACA CATCAGTGGTGCAAGACGAAGTGCTTGCTCATCGACTCGGTCTCATTCCGATCAAGGCAGATCCTCGACTGTTCGAATATCTTTCAGCAAGCGATACACC GAACGAGAAGAACACTATAGTTTTCAAGCTTCATGCTCGTTGTGGACCTAGCGAACGTCGAACAGTATATTCGGAGGAGTTGAAGTGGCTTCCTAACGGG AGCGAATTGGAAAGGGAAACAGACAGCGCAGATTCCAAACCAAGTACATATACTTCGTTCACTTGTAGCCAGGGCACGTTACCGGAATTCTCGACCAATC CAATCGGCCCTTCCGAGGATAAGATCATACTCGCCAAACTTGGCGGCAACCAGGCAAGAATTTCTCCTACCATTTGTCAGATTTATGTGCAAATGCTGAA GTATAGTTTAAACTCTGTACAGGAAATCGAGCTAGAAGCACATGCCGTTAAAGGCGTGGGCAAAACGCACGCGAAATGGTCTCCGGTAGCCACTGCTTGG TACCGTATGCTTCCCGAGGTAGTATTACTCGAAGATGTAGAAGACGAAGATGCCAAACAACTGGTGGAGAAATGTCCCGTTAATGTATTTGACATCGAAG ACCTTGGTCACGGTACGAAAAGGGCGACGGTGGCTAGGTCGAGGGATTGCACCTTGTGTCGGGAATGCATCAGAGGCGAAGGATGGGAGGATCGTGTGGC GTTGCGCCGAGTCAAAGATCATTTCATCTTTACTGTTGAATCAAGCGGAGTGTTACCGCCAGAGGTGATATTTTCAGAAGCAGTGAAGATCTTGGAAGAG AAATGCAGCAGAGTTATCAGCGAGCTCTCTTGA
AA sequence Show only first row Show all	>Lus10018468 pacid=23162150 polypeptide=Lus10018468 locus=Lus10018468.g ID=Lus10018468.BGIv1.0 annot-version=v1.0 MGQSEKKEAENNGGEQSNNKAKKFNIMDLPDLPMGILPPHLHQQKTRVACKPDAPIHTDNITYSGAYHSLGVDNSIHLDSFRNDFKVEIIRLNKDDMEFD MIGIDPALANAFRRILIAEVPSMAIEKVLVAYNTSVVQDEVLAHRLGLIPIKADPRLFEYLSASDTPNEKNTIVFKLHARCGPSERRTVYSEELKWLPNG SELERETDSADSKPSTYTSFTCSQGTLPEFSTNPIGPSEDKIILAKLGGNQARISPTICQIYVQMLKYSLNSVQEIELEAHAVKGVGKTHAKWSPVATAW YRMLPEVVLLEDVEDEDAKQLVEKCPVNVFDIEDLGHGTKRATVARSRDCTLCRECIRGEGWEDRVALRRVKDHFIFTVESSGVLPPEVIFSEAVKILEE KCSRVISELS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Lus10018468 [exp]	0	1
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	2.2	0.9498
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	4.2	0.9601
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	7.5	0.9516
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	8.6	0.9539
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	8.9	0.9493
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	12.5	0.9498
AT2G40800			unknown protein		Lus10012858 [exp]	13.9	0.9373
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	14.1	0.9436
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	14.7	0.9472
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	15.8	0.9313

Compare expression of checked genes

Lus10018468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.