Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61110 299 / 4e-100 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G15510 287 / 5e-95 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G52880 262 / 9e-86 NAC ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04070 256 / 9e-83 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 240 / 6e-78 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G77450 236 / 2e-76 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G01720 233 / 4e-75 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G52890 230 / 2e-73 NAC ANAC019 NAC domain containing protein 19 (.1) AT5G08790 229 / 3e-73 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G63790 229 / 6e-73 NAC ANAC102 NAC domain containing protein 102 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011215 [exp] 610 / 0 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10043095 [exp] 310 / 1e-103 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10032657 [exp] 309 / 2e-103 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10003269 [exp] 267 / 6e-87 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10006547 [exp] 265 / 5e-86 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10042531 [exp] 256 / 2e-82 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2) Lus10023179 [exp] 253 / 9e-82 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10015076 [exp] 252 / 2e-81 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10036117 [exp] 248 / 5e-80 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046700 [exp] 372 / 2e-128 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 355 / 7e-122 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G123500 [exp] 308 / 2e-103 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404400 [exp] 306 / 2e-102 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.013G054000 [exp] 272 / 5e-89 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.019G031400 [exp] 261 / 6e-85 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.011G058600 [exp] 249 / 3e-80 AT3G15510 227 / 6e-72 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.006G129400 [exp] 248 / 3e-80 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.004G049500 [exp] 247 / 1e-79 AT1G61110 232 / 4e-74 NAC domain containing protein 25 (.1) Potri.002G081000 [exp] 240 / 2e-77 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10018469 pacid=23162087 polypeptide=Lus10018469 locus=Lus10018469.g ID=Lus10018469.BGIv1.0 annot-version=v1.0 ATGGAGAGCACCGATTCATCGTCGGCGACTCACCACCACCCGAACCTCCCGCCGGGGTTCCGATTCCATCCGACAGATGAGGAGCTCGTCATCCACTACC TCAAGAAGAAAGCCGCCTCCCTCCCTCTCCCGGTCACCATCATTGCCGACGTCGATCTCTACAAATTCGATCCATGGGAGCTCCCCGGTAAGGCGACGTT TGGGGAACAAGAGTGGTACTTCTTCAGTCCGAGGGACAGGAAGTATCCGAACGGAGCGCGGCCCAATCGAGCCGCGACATCCGGATACTGGAAGGCGACC GGGACGGATAAACCGATATTGAGTTCGACCGGAGCGGGTAAAGTCGGGGTGAAGAAGGCGTTGGTTTTTTACGGCGGGAAGCCGCCTAAAGGGATTAAGA CTAATTGGATTATGCATGAGTATCGTTTGGTTAATAATAATTACGGCGGTAATTCTTGTACGCTACTTAAGCCACCGGTTTCCAATTCCGGCTCGAAGAA GTCGTCACTACGGTTGGACGATTGGGTGTTGTGTCGGATTTACAAGAAGAACACAAATTTGCAGAATCGGCCGGTTGATCAGAGAGATTACGAGCATATA AATCATCATCATCAGGATTCTAATTCAATCGAAGCGATGCTGGCTTCAACAACGGCGACTGTGAAGCCAGCTGGAAGCTACGCTTCTCTGCTGGAAGGTG AGGAGAATTTCTTCGACGGAATGCTGACAGCCGCCGCCGCCACCTCCGGCAGCGCCGCCGCCGGCGTGAGTTTCGGGATGAATAACAGCTCGAAGCGCAG GATTGTGATCAACGACTACTGGAACAGTATCAACGGCGAAACAATGTCGTCATCCGGTGGGAACAAGCGGTTTCACGGTGATCTGAAGACCGGCGGCGGC GGAGGGGGCGGCGGAGGTATGGAGGACAGCGGTGGCGCGGCTAATTCGTTTGTTTCGCTGATGAATCAGAGTAATACGGCGGCGTTTCAGGGAGGCGGGA TAATGGGGAGCTTGGGAGATGAAGACGGCGTCGTTTTGAGGCAGCAGTTTCAGTTTGGTTCATGA
AA sequence Show only first row Show all	>Lus10018469 pacid=23162087 polypeptide=Lus10018469 locus=Lus10018469.g ID=Lus10018469.BGIv1.0 annot-version=v1.0 MESTDSSSATHHHPNLPPGFRFHPTDEELVIHYLKKKAASLPLPVTIIADVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKAT GTDKPILSSTGAGKVGVKKALVFYGGKPPKGIKTNWIMHEYRLVNNNYGGNSCTLLKPPVSNSGSKKSSLRLDDWVLCRIYKKNTNLQNRPVDQRDYEHI NHHHQDSNSIEAMLASTTATVKPAGSYASLLEGEENFFDGMLTAAAATSGSAAAGVSFGMNNSSKRRIVINDYWNSINGETMSSSGGNKRFHGDLKTGGG GGGGGGMEDSGGAANSFVSLMNQSNTAAFQGGGIMGSLGDEDGVVLRQQFQFGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10018469 [exp]	0	1
AT4G38670			Pathogenesis-related thaumatin...		Lus10036435 [exp]	24.0	0.7960
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10025085 [exp]	32.8	0.7643
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	45.8	0.7303
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	49.8	0.7351
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035188 [exp]	65.0	0.7459
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038737 [exp]	71.1	0.7445
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	76.2	0.7415
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	79.2	0.6985
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042027 [exp]	92.5	0.6658
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	98.5	0.7040

Compare expression of checked genes

Lus10018469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.