Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61100 324 / 2e-98 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT5G43310 211 / 1e-56 COP1-interacting protein-related (.1.2.3.4) AT3G14172 149 / 1e-36 unknown protein AT1G17360 115 / 4e-26 unknown protein AT1G72410 110 / 2e-24 COP1-interacting protein-related (.1.2) AT4G27430 82 / 9e-16 CIP7 COP1-interacting protein 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011217 [exp] 1169 / 0 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10032660 [exp] 279 / 7e-80 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10043092 [exp] 261 / 7e-74 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10025112 [exp] 216 / 6e-66 AT1G61100 50 / 8e-08 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10021172 [exp] 202 / 7e-54 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10011809 [exp] 182 / 5e-47 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10013178 [exp] 139 / 4e-33 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 134 / 8e-32 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10000225 [exp] 115 / 8e-28 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046900 [exp] 500 / 4e-164 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.004G038300 [exp] 495 / 2e-162 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.001G403700 [exp] 288 / 5e-83 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G122900 [exp] 283 / 3e-81 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.008G168300 [exp] 209 / 8e-56 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.010G070200 [exp] 207 / 2e-55 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.003G070400 [exp] 144 / 7e-35 AT3G14172 544 / 3e-170 unknown protein Potri.001G164900 [exp] 142 / 3e-34 AT3G14172 521 / 1e-161 unknown protein Potri.019G064000 [exp] 79 / 1e-14 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 76 / 6e-14 AT3G14172 122 / 7e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018471 pacid=23162090 polypeptide=Lus10018471 locus=Lus10018471.g ID=Lus10018471.BGIv1.0 annot-version=v1.0 ATGGATTCCTCTGTTGTTCTTGACCACGCTCTGTTTCAGCTCACCCCGACTCGAACCAGATGTGATCTGATCGTGTTCTACGGAGGGAAGCCGGAGAAGC TGGCGTCCGGGTTGTTCGAGCCTTTCGTATCTCATCTCGAGTTCGCTCGAGACGAGAATTCAAAAGGCGGGTACTCGATCAAGCTCTGCCCTCCTTCTCG GTTTGCTCCCTGGTTCACCAAATCCACCTTCCACAGATTTGTGCGGTTTGTTAGTACTCCGGCTGTTCTTGAGAGGTTTGTTAGCCTAGAGTGCGAAATT CTGCAGATTGCTGAGAGCTCTGCTCAAGCCAATGAAGGATCCAATGAAAGCAAGAAAGACGAAGTAACTCCTCCAAAGCAAGAGAATTCCAAGGTCCAGT TCCAGAGGCTGCTCGAAACCCGGAAATCGATGCTTCGCAAAGAGCAAGCGATGGCGTATGCTAGAGGAATCGTTGCGGGGTTCGAACCGGACAAGCTAGA CGATCTGATTTCATTTGCCGATGCGTTCGGGGCGTCCAGGCTGAGGCAGGCTTGCATCAACTTCAAGGAGCTGTGCATAAAGAAGAGTGGTGATGGTTTG TGGATGAAGGAATTGGCAGCAATGGAGGCTTACGCTCCGGCTGATCTCGCGTTCACACCGGCATCGGGGATCGTGCTTACGAACGAAGGGTCACCGGATG GTTCGTTGGCCGATTCACTGGCTAACCCAGACGAAGCTTCTACGCCGACATTTCGCATGGGAATGCCATGGCAGCAGCAGAATCATCAGATGCCACCTTA CATGTACAATTTCCAGCAGGTGCATCATCCATATCCGTATCCTCATCCGATGCAGCCATACCCTCCTCAATACGGGATGAACATGCAATGGCCTACGAGC CGGAGAGAATCGAGTCCGAGGAAGCACCGCAGCAGGAAAGAAAGACGGTATTCAAGCGAAGGAAGCGAGGATGATGATGATGAATCGAGCGGTTCCGAAT CAGAAAACGATTCAAAATCCGAAATTCGCGAAGACAAGAAGCGGGAGGAGGATCAGCATACTTCCTCTGAAGATGTTGTTCCGGTCAAGAAGCATCATCA CAGGAGGAAGAAGTCGTCTTCGAAAACTGTTGTTATCCGGAATATAAACTACATTACTTCCAAGAGAAGAAATGGTGGCGGGGATGGATCATCTTCAGCT GAAGAGGACAACGGATTTGTCGATGAAGTGGTTGGATCGTTAGGAAAGATGAACGTATCCAAGTCGAAGAAAGGTTCGAAGACCGGTGATGGAGATATGC AGGAGAATGATGCTGCCTTGGGTTCCAAGGCATCTGGTAACTGGGAGTCTTTCCAGAATCTACTGATGAGAGGCGAGGAGCCAGCAGTCGTCAACGGAGT TGAAACTTTCGAAGAATCGGAGAAAGCACCAACGAACCGAAAGGTTCCTCCTGCGAACGATGCCTTCCTTGTGAACAAGGCAGGGGATCAGCCACATGGA AGAACGTCCGAGGAGGACTTCATGAACTCGGAGAACCAACGTTCGTTCGTTAGGAGGGCAGATCATACAGACGAAGATCTTGTCATTTCGCGAGGATTCG ATGGATCGAGAAGTGGGTTAGTAGCTGATGTTCTGTCTTCAAGTGAAAGCCTTTCATCATCCAGAGTGAAGCCTGGAAAAGGAGGGGAAGATTGGTTTGT AGCCAATAATAATTCAGTGGCTAACAATGAAGAAGCAATGTTCAATGGAGACTACATTGTTGGAGTGGAAACCAATTCTGCAGCAAAAACGGAGTTGATT TCTCGAGACAGATTGGTCGACGACTCGTTCATGTTAGACGCTGCCCGACCAGCTGCCGATCAGTACGACTCTCCTTGGAGAACAGACATAGCCATGGCTG CAGATATTTCGTTGTCCTCTTCGTCTCCACTCGAAAATGGGAATGCCAAAGAGAAGAGTACTCACAGTGGATCGGAGCCGGTTGACCTGTGCATGGTACT AGAAAGGGATTCGAACCGGTTCGAATCGGTTAGGGAATCCTGGTCTACTACTGATCAAGGTATGGACATTTCATTCATGGAAGGTGAAACTAGGAAACCA ATCATTGTTAAGGAGGAAGAGATTCAACCAATCCCAGAAACGCCAGTGTCCAAGAAGGGCGAGACGAAACCGAAAAAGGTTATAGGCAGAGCGAGAACCT CGATCATCAGCTCCGCACCCAAACGAGCGCCTCCACCGAAGCGGTCCTTGGCTCACAAGAGCAAGTTCGAGATTGAGGAAGAGGCTAGGAAGAAGGCGGA GGAAATCGCGATGCAGCGGCAGAAGAGGATAGCAGAAAGAACAGCGGCAGCAGCAGCAACAGGAAGTAAGAAAGTTCAAGCAAGCACTGCTGGCAGGAGC ACTTCTGTGAAAGTCAGAGCGGTTTAA
AA sequence Show only first row Show all	>Lus10018471 pacid=23162090 polypeptide=Lus10018471 locus=Lus10018471.g ID=Lus10018471.BGIv1.0 annot-version=v1.0 MDSSVVLDHALFQLTPTRTRCDLIVFYGGKPEKLASGLFEPFVSHLEFARDENSKGGYSIKLCPPSRFAPWFTKSTFHRFVRFVSTPAVLERFVSLECEI LQIAESSAQANEGSNESKKDEVTPPKQENSKVQFQRLLETRKSMLRKEQAMAYARGIVAGFEPDKLDDLISFADAFGASRLRQACINFKELCIKKSGDGL WMKELAAMEAYAPADLAFTPASGIVLTNEGSPDGSLADSLANPDEASTPTFRMGMPWQQQNHQMPPYMYNFQQVHHPYPYPHPMQPYPPQYGMNMQWPTS RRESSPRKHRSRKERRYSSEGSEDDDDESSGSESENDSKSEIREDKKREEDQHTSSEDVVPVKKHHHRRKKSSSKTVVIRNINYITSKRRNGGGDGSSSA EEDNGFVDEVVGSLGKMNVSKSKKGSKTGDGDMQENDAALGSKASGNWESFQNLLMRGEEPAVVNGVETFEESEKAPTNRKVPPANDAFLVNKAGDQPHG RTSEEDFMNSENQRSFVRRADHTDEDLVISRGFDGSRSGLVADVLSSSESLSSSRVKPGKGGEDWFVANNNSVANNEEAMFNGDYIVGVETNSAAKTELI SRDRLVDDSFMLDAARPAADQYDSPWRTDIAMAADISLSSSSPLENGNAKEKSTHSGSEPVDLCMVLERDSNRFESVRESWSTTDQGMDISFMEGETRKP IIVKEEEIQPIPETPVSKKGETKPKKVIGRARTSIISSAPKRAPPPKRSLAHKSKFEIEEEARKKAEEIAMQRQKRIAERTAAAAATGSKKVQASTAGRS TSVKVRAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	0	1
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	1.0	0.8983
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	1.4	0.8241
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	4.2	0.8147
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	4.5	0.8129
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	8.4	0.7886
AT4G35320			unknown protein		Lus10022985 [exp]	9.2	0.8122
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	9.8	0.7965
AT5G55960			unknown protein		Lus10022565 [exp]	9.8	0.7876
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	13.5	0.7637
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	14.1	0.7804

Compare expression of checked genes

Lus10018471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.