Plant FIBer expression Database

Lus10018472 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10018472 pacid=23162146 polypeptide=Lus10018472 locus=Lus10018472.g ID=Lus10018472.BGIv1.0 annot-version=v1.0
ATGTCTCTTGCTCTGGGAAGGTTGATTCTCTCACCGTCCGATCTCTCACTCCGGTATCGTAACAACCCAACTAGTTGCTTCTCTCCCAACTTCCTCCGTC
AAAGCCGCCGCCGGCGAAAGAACCACGACGGAGAAGATGCGAACGTTACCGCTTTCGGCCTCAGACTATGCTCCGATGGAGTGAAATCCGTTCTACCTAC
TCTCAGTAGCTGCTCTAAGTCGTTAAAAAGATTTCCCATGTATTTCCGGAGGCAGAGTTTCGCGGCGGCAGTGATTCCGGGTGGCGTTGGATCCACTCTG
CCGGAAGATTACGACTTTGACCACGACGGGTTGGACGGAGGTGGCGGCGATGGAGGAAAAAAAGACGGTGGAGAAGGCGGAGGTGGGAGCTTCGACGACG
GTGGCGATTCGAGATTGGACGGGTACCCAATATGGTGGTGGTGGGTCTGGTGGCAATGGCAGAAACAACGTGGATCTCGCAACGGTACAAATTTCAATAG
ACTGATTGAAATGGTGTTGGCGCCGGAGGAACTGACGAGTAGAGAACGGACCGGGGATTGGAAGCAATTCGTCGAGAAAGTAAAGAAGTACAGAAGCGAT
ATCTTAGACGCGATTCTGCAAGCGATTCTAACGCCGTTCGCGTTTCTCGCGATTGCGATTGTGGAGCCAAGATTACGGGACTCTTATGTTCCGTACCCGT
TTACATTTTTTGTGTACTTTAACGATGTGATGCTTGTGACGATGCAGCTGGTGTTGGGCACGGCTCTGCTGATTTCAACATTGTTGTTATGGTGGATATG
GCGGCGGCTCCACCGCAGTGGTTCCGCCGGAGAAGGCGTCGGTGATCAGCAGCAAGATTCAGGCGAGGATAGTGGTGATGATAGAGCCCCCATGACCAAC
GAAAATTCGGAGGATCAAGTGCTTAGTGCTAGACAGCTAGACTTGTCACCTTAA
AA sequence
>Lus10018472 pacid=23162146 polypeptide=Lus10018472 locus=Lus10018472.g ID=Lus10018472.BGIv1.0 annot-version=v1.0
MSLALGRLILSPSDLSLRYRNNPTSCFSPNFLRQSRRRRKNHDGEDANVTAFGLRLCSDGVKSVLPTLSSCSKSLKRFPMYFRRQSFAAAVIPGGVGSTL
PEDYDFDHDGLDGGGGDGGKKDGGEGGGGSFDDGGDSRLDGYPIWWWWVWWQWQKQRGSRNGTNFNRLIEMVLAPEELTSRERTGDWKQFVEKVKKYRSD
ILDAILQAILTPFAFLAIAIVEPRLRDSYVPYPFTFFVYFNDVMLVTMQLVLGTALLISTLLLWWIWRRLHRSGSAGEGVGDQQQDSGEDSGDDRAPMTN
ENSEDQVLSARQLDLSP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10018472
[exp]
0 1
AT1G65930 cICDH cytosolic NADP+-dependent isoc... Lus10007380
[exp]
4.2 0.9094
AT3G03140 Tudor/PWWP/MBT superfamily pro... Lus10013363
[exp]
4.9 0.8862
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Lus10017282
[exp]
6.9 0.8999
AT5G10830 S-adenosyl-L-methionine-depend... Lus10002994
[exp]
7.4 0.8945
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Lus10005610
[exp]
8.7 0.8997
AT3G02875 ILR1 IAA-LEUCINE RESISTANT 1, Pepti... Lus10022761
[exp]
14.0 0.8754
AT1G12910 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYA... Lus10012593
[exp]
14.7 0.8896
AT3G09920 PIP5K9 phosphatidyl inositol monophos... Lus10022606
[exp]
18.7 0.8924
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Lus10021909
[exp]
18.8 0.8896
AT2G38300 GARP myb-like HTH transcriptional r... Lus10012239
[exp]
19.4 0.8952

Lus10018472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.