Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 337 / 5e-101 unknown protein AT1G11070 316 / 2e-94 unknown protein AT1G61080 298 / 1e-86 Hydroxyproline-rich glycoprotein family protein (.1) AT3G25690 78 / 2e-14 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT4G18570 76 / 8e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07120 74 / 1e-13 unknown protein AT1G48280 67 / 5e-11 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011209 [exp] 726 / 0 AT4G04980 336 / 2e-100 unknown protein Lus10038307 [exp] 487 / 1e-157 AT1G11070 330 / 2e-99 unknown protein Lus10036174 [exp] 335 / 8e-109 AT4G04980 236 / 6e-73 unknown protein Lus10036173 [exp] 283 / 2e-84 AT4G04980 96 / 2e-20 unknown protein Lus10031636 [exp] 283 / 5e-83 AT4G04980 313 / 3e-95 unknown protein Lus10033704 [exp] 281 / 4e-82 AT4G04980 311 / 4e-94 unknown protein Lus10000986 [exp] 81 / 2e-15 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 79 / 9e-15 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 78 / 2e-14 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038400 [exp] 412 / 7e-130 AT4G04980 387 / 4e-121 unknown protein Potri.011G047100 [exp] 412 / 4e-129 AT4G04980 358 / 1e-109 unknown protein Potri.001G317001 [exp] 314 / 7e-95 AT4G04980 320 / 5e-98 unknown protein Potri.001G279000 [exp] 73 / 4e-13 AT1G07120 440 / 2e-153 unknown protein Potri.010G130800 [exp] 72 / 2e-12 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 71 / 3e-12 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 70 / 6e-12 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G064500 [exp] 69 / 1e-11 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G073600 [exp] 68 / 1e-11 AT1G07120 434 / 4e-151 unknown protein Potri.004G054900 [exp] 68 / 2e-11 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018473 pacid=23162214 polypeptide=Lus10018473 locus=Lus10018473.g ID=Lus10018473.BGIv1.0 annot-version=v1.0 ATGTCGAATACCCGCCAACTGGAAGAAGAAATTAAAAGAAAAGATCGTCATCAACACGAAGAAGAGGAGGAAGAAGAAGAGGAAGGAGAAGAGGAGGAGG ATCTAGACGAATACGACGAAGACATTGTCGTTCCGACAAAAGAACATAACGACCACATCTTCGGCCGGAGCGCATTCCATATAAGAAAGACTGCTCTGCA CCTCCGTAACCTTCTTGGCAACCTCGCCAGAAAAAGGCCCCAAGCTCCGACAATGCCAAATGGGACCTTATGTGGGTTGAGGCCATTTCTATTGGGACGC AAGGCATTTCGAGATGAGGCGGGAAGAGGGCATTCAAGCAGCAAGGGGGAGAAGTACCCGATCCCGAGGCCGAAAAATATGGTGCGAACAAAAGGCGGAT CGACGGGGTTGTTCATCCTGATGATGGACCTGAGAAAGAAGATTATACTCTTCAGGGACGCATTTGAGCTGCCACCTTGTGATGAATCTGCTTCCATTAA TGAACTGGTGACGGAAACCATGTTGGACCTCCACAATCTGTACCCTGAAATCATACCCATCAAGGATTTGTCAGAGATCAAAGAGGGAGCATCGATTCAC GAGATTCTGATTTACTTGTGTGGAGCGTTGAGATCCGTTGGAGATTCATGGGTGAAGAATCATGAGTGGATGGACAAGACTACATTATACAGACAGAACA ACAAGGATGAATTAAATTCGGAACAACTAGTTGAGCTTTCGTTGGCAACACTCAATTGCTTGATTACGATTCCAAAGGAGAAGTCTGACACGACTGAAGA ACAAGATGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGATGAGAAAGAAGCCGTACCTGACGAGAAACTATTTGTGAGGTCTTACTCAGAGAGCAAGGCC AGTAAGCCGTTTAGTGCTTCCCCAGAGACACCAACGTCAGTTCTCCACGGGTTAACGTGCGCCGCTGATTCTCCCACTGATTCTCCTAAGGCACGGGAGT TTTCGAACTTGTATTGCTCGTCGCCGCTTCTGAGGTTTCTGAGCGTTGACGCAGTAGGGAAATTGAACCACATTGACATCAAGCGGCTTTCTTTCCAATT GTTTCCACACCACGGCCACCACAAGAACAGTGAGGACAAAATTGTGGAGACCAAACCCTGCAGTGAAAAAGATGAGAATGAGGAAGATCCCAGTAAAGAC AATGGAACAACAGAGTCTGAAATGGTTCCACCTGTTCCATTGCCAACTGCACCTCCACCTCCTCCGCCTGCACCTCCACCACCGTGGATGAAGGTAGGTT CGGAACCACCGTTACCTCCTCCATTGCCACCATGGGAAACGTCGGAGAAGAGTGTGATTCCACAACCTCCGCCACCGCCTCCATTTTCCAGTGGAGGATT GTCTGCATCGCAGCCAAATGTAATGGTTCCGGAAGCTCCTCCATTGCCTCCTACTGTTTTGAAGTCTCAAGCTGCTACTATAAGTACATCACTGCCTATT CCACCCCCGCCACCACCTCTACCGGCATCAGTGCAGCTTTCACCACCACCGTCTCTATCTGTACAAAAACCTCAGCAAGACGTGCCACCCTCACAACCAC TACCACCACAACAGATGGCATCACAAGGGGAGCAACTATCGTCCTCATCGTCACAGCCTGCGCCAAGTACCGTACAACAAGGAGCACCAACACCACCTCT ATCACCAGGGCAATCTTCAAATGGACTTGCTCCGCCACCTCCCGCACCAGGGTCATCTTCAAATGGACCGGGTCCGCCATCTCCGCCACCAGGGCCATCT TCAAATGGAACGGCTCTGCCACCTCCTCCACCAGGGCCATCTTCAAATGGACCGGCTCTGCCACCTCCGCCACCAGGGCCATCTTCGAATGAACCGGCTA CGACACCTCCGCCACCAGGGTCATCTTCAAAAGGCTCGGCTCCGCCACCTCCGCCACCACCAGGGTCATCTTCAAATGGACCAGCTCCGCCACCTCCCTT ACCATCCAGAAATGGAGCAGGACCTCCACCTCCTCCCCCAGGTGCAGGGAACATGCTGCGGCCAAGGAAAGGGCAAAGCAAATTGAAGAGGTCAAGCCAA ATGGGGAATTTGTACAGGACATTGAAGGGTAAGGTAGAAGGAGGTAATCAGACGAGAGTGAAGGGTGGAAGAGCAAGCCCAAATTCTGGAAATAACAATG GCGGGAAGCAAGGGATGGCTGATGCACTAGCAGAGATAACAAAGAGATCAGCATACTTCCAACAAATTGAAGAGGATGTTCAAACCTATGCAACAGACAT AGCAAAGTTAAAAACTGAAATTAGCAGTTTTAAAACAAAGGATATGACAGAATTGGTCAACTTCTACCATCATGTTGAGTCGATTCTCGAGAACCTGACA GATGAATCACAGGTCCTCGCAAGGTTCGAAGGTTTCCCACAAAAGAAATTGGAAGCAATAAGGGCATCAGCATCACTCTTCTGCAAGTTAAGAGGGATAG TCACTGACCTACAGACATGGAAGATGGAGCCCCCGTTGGACACACTTCTCGACAGGACCGAACGATATGTCAACAAGATGAAGGGAGATTTGGATGCATT CGAGAGGAACAAAGACGATGAATGCAAGAAATTCAAGAGCCACAACATCGAATTCGACCTGCAGATCCTGGTACAGATCAAGGAAGCGGTGGTGGATCTT TCCTCCAATTGCATGGAATTGGCACTCAAAGAAAGGAAAGAAGCTTCAAACAATGGAGCTCAACCAAGCAAGTCAACTTGTAAGACGCTGTGGAGAGCCT TCCAGTTTGCTTTCAGAGTGTACACTTTCGCCGGCGGACACGATGATCGAGCTGATAGACTGACGCGAGAATTGGCTCAACAAATAGAGGAAGATCACCG TCTAATGCAGGAAAAACCTCCGTAG
AA sequence Show only first row Show all	>Lus10018473 pacid=23162214 polypeptide=Lus10018473 locus=Lus10018473.g ID=Lus10018473.BGIv1.0 annot-version=v1.0 MSNTRQLEEEIKRKDRHQHEEEEEEEEEGEEEEDLDEYDEDIVVPTKEHNDHIFGRSAFHIRKTALHLRNLLGNLARKRPQAPTMPNGTLCGLRPFLLGR KAFRDEAGRGHSSSKGEKYPIPRPKNMVRTKGGSTGLFILMMDLRKKIILFRDAFELPPCDESASINELVTETMLDLHNLYPEIIPIKDLSEIKEGASIH EILIYLCGALRSVGDSWVKNHEWMDKTTLYRQNNKDELNSEQLVELSLATLNCLITIPKEKSDTTEEQDEEEEDEEEEEDEKEAVPDEKLFVRSYSESKA SKPFSASPETPTSVLHGLTCAADSPTDSPKAREFSNLYCSSPLLRFLSVDAVGKLNHIDIKRLSFQLFPHHGHHKNSEDKIVETKPCSEKDENEEDPSKD NGTTESEMVPPVPLPTAPPPPPPAPPPPWMKVGSEPPLPPPLPPWETSEKSVIPQPPPPPPFSSGGLSASQPNVMVPEAPPLPPTVLKSQAATISTSLPI PPPPPPLPASVQLSPPPSLSVQKPQQDVPPSQPLPPQQMASQGEQLSSSSSQPAPSTVQQGAPTPPLSPGQSSNGLAPPPPAPGSSSNGPGPPSPPPGPS SNGTALPPPPPGPSSNGPALPPPPPGPSSNEPATTPPPPGSSSKGSAPPPPPPPGSSSNGPAPPPPLPSRNGAGPPPPPPGAGNMLRPRKGQSKLKRSSQ MGNLYRTLKGKVEGGNQTRVKGGRASPNSGNNNGGKQGMADALAEITKRSAYFQQIEEDVQTYATDIAKLKTEISSFKTKDMTELVNFYHHVESILENLT DESQVLARFEGFPQKKLEAIRASASLFCKLRGIVTDLQTWKMEPPLDTLLDRTERYVNKMKGDLDAFERNKDDECKKFKSHNIEFDLQILVQIKEAVVDL SSNCMELALKERKEASNNGAQPSKSTCKTLWRAFQFAFRVYTFAGGHDDRADRLTRELAQQIEEDHRLMQEKPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04980			unknown protein		Lus10018473 [exp]	0	1
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	2.6	0.8417
					Lus10007510 [exp]	5.5	0.7690
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	7.2	0.7745
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	8.9	0.7550
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	9.2	0.7836
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	9.5	0.7642
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	9.8	0.7922
					Lus10026090 [exp]	10.4	0.7296
					Lus10026444 [exp]	11.7	0.7303
AT4G35980			unknown protein		Lus10042598 [exp]	13.3	0.7580

Compare expression of checked genes

Lus10018473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.