Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61065 189 / 1e-61 Protein of unknown function (DUF1218) (.1) AT1G52910 150 / 1e-46 Protein of unknown function (DUF1218) (.1) AT3G15480 148 / 8e-46 Protein of unknown function (DUF1218) (.1) AT4G27435 147 / 2e-45 Protein of unknown function (DUF1218) (.1) AT1G13380 130 / 2e-38 Protein of unknown function (DUF1218) (.1) AT1G68220 95 / 1e-24 Protein of unknown function (DUF1218) (.1) AT5G17210 47 / 6e-07 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011208 [exp] 172 / 3e-55 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1) Lus10032662 [exp] 167 / 5e-53 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 166 / 1e-52 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 137 / 3e-41 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 134 / 7e-40 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10043484 [exp] 111 / 5e-31 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 110 / 2e-28 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10032663 [exp] 57 / 4e-10 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1) Lus10010077 [exp] 54 / 5e-09 AT5G17210 263 / 8e-90 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122700 [exp] 176 / 2e-56 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 168 / 2e-53 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 164 / 6e-52 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 137 / 2e-41 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 132 / 2e-39 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 114 / 5e-32 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 113 / 8e-32 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 73 / 3e-16 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 54 / 6e-09 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10018474 pacid=23162143 polypeptide=Lus10018474 locus=Lus10018474.g ID=Lus10018474.BGIv1.0 annot-version=v1.0 ATGGCGTCGACGCTTGTTATCGTGGTGGTGTTCGTCCTTGATGTGATCGCTTTCTCCCTCGCTGTCGCCGCCGAACAAAGAAGAAACACCGGGTCGCTGC AAGCTGACGAGAACAACAATGGGTTCTGTATGTACGACTCGGACATAGCGACCGGGTTAGGGGTTGGTTCGTTGGTTACTCTGATGGCGAGTCAACTCTT GATCATGGGAGTGACTCGGTGCTTGTGCTGTGGGCGAGCCCTACGGCCCAGTGGGCCTAGATCGTGGGCCATTGTCTTGTTCATCACAAGCTGGGTGTTC TTCTTCATCGCCGAAGTGTGCCTGCTGGCCGGCTCAATCCGGAACGCCAAGCACACGGCTTACCTGCCAGAGAACTCGTTCTCGTGCAAGGCGATGAGGA AGGGAGTATTTGCGGCGGGAGCTGCCTTTGTAGTGTTCACCGGAATCACATCGGAGTTCTACTACATCAACCATTCGAGGGCTAACGACGGCCAGCCTTC TCTCGTCAGAGACGCCGGGGTTACCATGGGACGGCTCTAG
AA sequence Show only first row Show all	>Lus10018474 pacid=23162143 polypeptide=Lus10018474 locus=Lus10018474.g ID=Lus10018474.BGIv1.0 annot-version=v1.0 MASTLVIVVVFVLDVIAFSLAVAAEQRRNTGSLQADENNNGFCMYDSDIATGLGVGSLVTLMASQLLIMGVTRCLCCGRALRPSGPRSWAIVLFITSWVF FFIAEVCLLAGSIRNAKHTAYLPENSFSCKAMRKGVFAAGAAFVVFTGITSEFYYINHSRANDGQPSLVRDAGVTMGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	0	1
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	1.4	0.8530
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	2.0	0.8528
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	3.9	0.8439
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	4.2	0.8000
					Lus10022348 [exp]	4.9	0.8173
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	5.3	0.8149
AT3G57450			unknown protein		Lus10019730 [exp]	7.6	0.7558
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	8.7	0.8240
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	9.6	0.8386
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	15.0	0.7614

Compare expression of checked genes

Lus10018474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.