Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21660 727 / 0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) AT1G11520 151 / 2e-42 pliceosome associated protein-related (.1) AT1G67210 42 / 0.0007 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1), Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011207 [exp] 936 / 0 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Lus10003067 [exp] 44 / 0.0005 AT5G38600 342 / 5e-111 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047600 [exp] 791 / 0 AT4G21660 737 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Potri.004G039000 [exp] 790 / 0 AT4G21660 740 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Potri.004G104400 [exp] 44 / 0.0003 AT5G38600 404 / 3e-134 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Potri.017G111300 [exp] 44 / 0.0004 AT5G38600 400 / 4e-133 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04037 [flax] [poplar] DUF382 Domain of unknown function (DUF382) PF04046 [flax] [poplar] PSP PSP
Representative CDS sequence Show only first row Show all	>Lus10018475 pacid=23162213 polypeptide=Lus10018475 locus=Lus10018475.g ID=Lus10018475.BGIv1.0 annot-version=v1.0 ATGGTGGCGGAGATTCTGCCGCAGCAGAACGGCGGCATGTTGTCCAACGGCGGAGGCGGTTTGGCCGCCAACGGAGATCTGAGCACCGTAAACCCTAGCT CAACCGCTTCCGGCAAGAAGGCGAGGGAGAGCGAGCGTCGGCGACGTAGGCGCAAGCAAAAGAAGAACAAGTCTGCTTCTAAGGTCGCCAATGATGACGA CAGCGACGCCGATGAGGCTAAGGAGAACGCCGATCCTCAAAAGGATCTCGAGAAAGTAGAAATTGAATATGTGCCAGAGAAGGCAGAGCTGGAAGATGGC ATGGATGATGAATTAAGGAAGGCCATTGAGAAGTTCAGCTTTGTCAGCTCAGCTGCTGAGGACACGGAGAAGAAAGTTGAAGCAGCAGAAAATGTCGAGT CTAAGAAGAAGGCTGACTCAGATTCTGATGAGGAGGAGCAAGAGAATGGACAGAAGGATAAAGGAGGGATGTCAAACAAGAAGAAGAAACTTCTACGAAG AATGAAGATCGCTGAGCTCAAACAGAAATGCTCAAGACCTGATGTGGTTGAGGTGTGGGATGCTACTGCTTCAGATCCAAAGCTGCTTGTATTCTTAAAG GCCTACAGAAACTCTGTTCCTGTACCAAGACACTGGTGTCAGAAACGCAAATATCTTCAGGGTAAGCGTGGTATTGAGAAGCAACCTTTCCAGTTGCCTG ATTTTATTGCTGCAACAGGAATTGAAAAGATCCGTCAGGCATATATTGAGAAGGAGGACAGTAAGAAATTGAAGCAGAAGCAACGAGAGCGGATGCAACC TAAGATGGGCAAGATGGACATTGATTATCAGGTTCTTCATGATGCCTTTTTCAAGTACCAAACAAAACCGAAGTTATCAAGTCATGGAGACTTGTACCAC GAAGGAAAGGAGTTCGACGTGAAACTTAGGGAGATGAAACCCGGTACTCTTTCACAAGAACTAAAAGAAGCACTCGGTATGCCTGAAGGTGCCCCTCCTC CGTGGCTTATCAACATGCAGAGATATGGACCTCCGCCATCATATCCTCATTTGAAGATTCCTGGACTTAATGCTCCGATTCCTTCTGGAGCTAGCTTTGG TTATCACCCTGGTGGCTGGGGCAAGCCTCCAGTGGATGAATATGGGCGGCCGCTGTACGGAGATGTTTTCGGAGTCCAACAACAAGAACAACCTACCTAC GATGAGGAGCCAGTAGATAAGAGTAAGCATTGGGGTGATTTGGAAGAAGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGATGAAGAGA TGGAAGAAGAGGAACTCGAGGATGGCATCGGATCCGTCGACAGTCTTTCCACTACGCCAACCGGTGTCGAGACACCTGATGTTATCGACCTCCGTAAACA GCAGAGGAAGGAGCCCGATAGACCTCTCTACCAAGTTCTTGAACAAAAGGAGGAGAGTGTTGCTGCTGGAACTTTGCTTGGAACAACTCATACGTATACA ATCGCTGGTTCCGGTACCGGTGTTGCCCAAGACAAGTCGGGCGCTAAAAGGGTGGATCTGCTGAAGGGCCACAAAGCTGACAGAGTGGATGTCAGCTTAC AGCCTGAAGAACTGGAAGCTATGGATAACGTCCTCCCTGCCAAGTACGAGGAAGCGAGAGAGGAGGAGAAGTTACGAAGTCAACGCGAGGACTTCAGCGA CATGGTTGCCGAGAATGAAAAGAAGAGGAAGCGCAAGATGCAAGACAAGGACGGGAAATCGAAGAAGAGAGACTTCAAGTTCTAG
AA sequence Show only first row Show all	>Lus10018475 pacid=23162213 polypeptide=Lus10018475 locus=Lus10018475.g ID=Lus10018475.BGIv1.0 annot-version=v1.0 MVAEILPQQNGGMLSNGGGGLAANGDLSTVNPSSTASGKKARESERRRRRRKQKKNKSASKVANDDDSDADEAKENADPQKDLEKVEIEYVPEKAELEDG MDDELRKAIEKFSFVSSAAEDTEKKVEAAENVESKKKADSDSDEEEQENGQKDKGGMSNKKKKLLRRMKIAELKQKCSRPDVVEVWDATASDPKLLVFLK AYRNSVPVPRHWCQKRKYLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLSSHGDLYH EGKEFDVKLREMKPGTLSQELKEALGMPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPSGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQPTY DEEPVDKSKHWGDLEEEEEEEEEEEEEEEEDEEMEEEELEDGIGSVDSLSTTPTGVETPDVIDLRKQQRKEPDRPLYQVLEQKEESVAAGTLLGTTHTYT IAGSGTGVAQDKSGAKRVDLLKGHKADRVDVSLQPEELEAMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQDKDGKSKKRDFKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	2.8	0.8859
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	4.0	0.8757
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	5.7	0.8816
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	6.1	0.8891
AT2G17030			F-box family protein with a do...		Lus10012519 [exp]	6.2	0.8162
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10020893 [exp]	7.1	0.8675
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	11.2	0.8478
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	11.5	0.8665
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	12.5	0.8241
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	12.6	0.8329

Compare expression of checked genes

Lus10018475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.