Plant FIBer expression Database

Lus10018476 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G61040 583 / 0 VIP5 vernalization independence 5, plus-3 domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011205
[exp]
909 / 0 AT1G61040 681 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G047900
[exp]
656 / 0 AT1G61040 687 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
Potri.004G039500
[exp]
656 / 0 AT1G61040 694 / 0.0 vernalization independence 5, plus-3 domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03126 Plus-3 Plus-3 domain
Representative CDS sequence
>Lus10018476 pacid=23162139 polypeptide=Lus10018476 locus=Lus10018476.g ID=Lus10018476.BGIv1.0 annot-version=v1.0
ATGGCAGATTTGGAACATTTGCTGCTGGAGGCAGCTGGAAGAACTGGCAATGGAGGAAGAAGCAGGAATTCACGACCGCCTTCCAGGAGGAGAGATGAGG
GTTCTGATTCGGACGGTGGAAGCGATTCTAGGGAGGACGATTCGGATGATGACCGTGGTGGAGGATATGCAAGCAGAAAGCCGTCCGGGTCTCAAGTCCC
ACTGAAGAAGAGACTGGACGCTGGTGAAAAGGACGACGAACATGGAAGCCTGGAGGAAGATGGCGATTACGACGATAGGGGATCTGATCGGGAACGTGGC
AGCAGTGACGAATCTGAGGTTGGTTCAGATCTTTATAAGGATGAGGACGATAGGAGGCACTTGGAGCAGATGTCGGAACTCGAGAGGGAAATGATACTAA
CGGAACGGGCAGACAAGAAAGGCGATAAGGATTTGACTGAGAGGATCCGGTCGAAACGTGAGAACAACAACAACAACGAGAAGGCGAAGGGGAAGGTGGA
CCCTCCGCCACCTCCACAATCGTCTCGTATTGTTCGATCTTCGACTCGGTCTGCTGACCGGGCGGCTGCGAAAGACGACGCGTTGAACGAGTTGCGAGCT
AAGAGACTGAAGCAAAAGGATCCGGAGGGTCACAGGAAGCTGAGAGAAGGTATTACGCCGCTCAAGCGGAAGAGTTTCGCTTCCGCTACTAGATTGAGCA
ACTCTAGTCAGAGCGAATCTGAGAGCGACGACGATGATGATGATTCGAACGGTGGAATGGAAGACAGTGACGACGAGCCTGGATCAAAGGGACCATCGTA
CGAAGACATTCGAGAAATCACGATAAAACGATCGAAGCTTGTTAAATGGCTGATGGAGCCGTGGTTCGATGAGCTCATAGTCGGTTGCTTCGTTCGAGTC
GGGATCGGGATGTCAAGATCCGGACCAATATACCGACTCTCGTTGGTTCGGAACGTCGATGCTGCTGATCCGGATCGGCCGTACAAGCTTGAGAACAAGA
CGACGTATAAATACCTGAACTGCGTATGGGGTAATGAGAACTCGGCCGCTCGATGGCAGATGGCGATGGTTTCTGATTCGGTGCCGACGGAGGAAGAGTA
CAGGCTGTGGAAGAAGGAAGTGGAGAAGTCGAACGGCCGGTTGCCGAGCAGGCAAGAGATAATGGAGAAGAAGGAAGCGATTAAGAAGACTAATACTTAT
GTCTACTCGGCCGCCACAGTGAAGCAGATGCTGCAAGAGAAGAAGTCTGCATCGACGAGACCGTTGAACGTTGCAGCTGAGAAGGACCGGCTGAGGAACG
AGATGGAAGTGGCGATGAGCCGGAACAATCATTCCGAGGTTGAGAGGATTAAAGCGAGGATACAGGAACTTGAAGCGTCGAGACAGGGTCAGGAAGTGGA
CAAGAAGGCGCTGAAGCTGGCCGAGATGAATAGAAGGAACCGGGTCGAGAATTTCCGAAACGCTTCGGCGGCTAATACCGGGTTGAAAGCTGGGGAAGCT
GGGTACGATCCGTTTTCGAGGAGGTGGACTCGGTCAAGAAACTATTACGCCGCGCAGAAAGCAGGGGACAGTGGGGACGGCAGCCGCCGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTACGCAGCGGAGAGGAAGGGGTGAGCGCACGCGCGGAGAAGGTGCCCGCCTTGCAGGCGGCTGCCGGTGCAGGGAA
GCTGGTCGATACAATTGCTCCGATGGATTTAGGGACGGAGACGAATACGTTGCATGACTTTGAGCTTCCGATCTCGTTAGATGTGCTTGAGTACTGGGGT
GGCGCTAAAGGAGCTCAGGCCGGGTTCTTGGCTAGGAAGCAGAGGATCGAAGCGAGTATGGGAGTAAGAGTTCCGGAGAATGATGGGAGACGGCACGCGC
TGACTTTGACTGTTAGTGATTACAAGAGAAGAAGAGGGCTTCTCTAA
AA sequence
>Lus10018476 pacid=23162139 polypeptide=Lus10018476 locus=Lus10018476.g ID=Lus10018476.BGIv1.0 annot-version=v1.0
MADLEHLLLEAAGRTGNGGRSRNSRPPSRRRDEGSDSDGGSDSREDDSDDDRGGGYASRKPSGSQVPLKKRLDAGEKDDEHGSLEEDGDYDDRGSDRERG
SSDESEVGSDLYKDEDDRRHLEQMSELEREMILTERADKKGDKDLTERIRSKRENNNNNEKAKGKVDPPPPPQSSRIVRSSTRSADRAAAKDDALNELRA
KRLKQKDPEGHRKLREGITPLKRKSFASATRLSNSSQSESESDDDDDDSNGGMEDSDDEPGSKGPSYEDIREITIKRSKLVKWLMEPWFDELIVGCFVRV
GIGMSRSGPIYRLSLVRNVDAADPDRPYKLENKTTYKYLNCVWGNENSAARWQMAMVSDSVPTEEEYRLWKKEVEKSNGRLPSRQEIMEKKEAIKKTNTY
VYSAATVKQMLQEKKSASTRPLNVAAEKDRLRNEMEVAMSRNNHSEVERIKARIQELEASRQGQEVDKKALKLAEMNRRNRVENFRNASAANTGLKAGEA
GYDPFSRRWTRSRNYYAAQKAGDSGDGSRRXXXXXXXXXXXLRSGEEGVSARAEKVPALQAAAGAGKLVDTIAPMDLGTETNTLHDFELPISLDVLEYWG
GAKGAQAGFLARKQRIEASMGVRVPENDGRRHALTLTVSDYKRRRGLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G61040 VIP5 vernalization independence 5, ... Lus10018476
[exp]
0 1
Lus10010972
[exp]
1.0 0.9084
AT1G06210 ENTH/VHS/GAT family protein (.... Lus10024896
[exp]
1.4 0.9024
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Lus10025406
[exp]
3.0 0.8862
AT1G30480 DRT111 DNA-DAMAGE-REPAIR/TOLERATION P... Lus10038451
[exp]
3.5 0.8859
AT1G64090 RTNLB3 Reticulan like protein B3 (.1.... Lus10024687
[exp]
4.5 0.8311
AT1G16210 unknown protein Lus10022649
[exp]
5.5 0.8834
AT5G41020 MYB myb family transcription facto... Lus10024036
[exp]
7.0 0.8510
AT3G20890 RNA-binding (RRM/RBD/RNP motif... Lus10030139
[exp]
8.9 0.8186
AT5G28040 GeBP DNA-binding storekeeper protei... Lus10015944
[exp]
10.4 0.8663
AT3G08780 unknown protein Lus10022677
[exp]
13.9 0.8391

Lus10018476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.