Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 181 / 9e-55 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 172 / 4e-51 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 170 / 1e-50 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 169 / 5e-50 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 145 / 4e-41 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26740 144 / 9e-41 ATSEH soluble epoxide hydrolase (.1) AT2G26750 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G12830 45 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 45 / 6e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038312 [exp] 454 / 5e-162 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 452 / 3e-161 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 385 / 5e-135 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 378 / 4e-132 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 372 / 1e-129 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 364 / 1e-126 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 340 / 3e-117 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 204 / 7e-64 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 199 / 5e-62 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048000 [exp] 411 / 3e-145 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 372 / 7e-130 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 350 / 3e-121 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 323 / 1e-110 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 201 / 8e-63 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 196 / 8e-61 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 183 / 3e-55 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 175 / 2e-52 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 160 / 4e-47 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 156 / 5e-45 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10018477 pacid=23162092 polypeptide=Lus10018477 locus=Lus10018477.g ID=Lus10018477.BGIv1.0 annot-version=v1.0 ATGGATCAGATTGAGCACAAATTCGTCGAAGTTGAAGGAGGATTGAAGCTCCACGTAGCTGAAATCGGATCCGGCGAGAAAGCGATCCTGTTCCTCCATG GATTCCCTGAAATCTGGTACTCATGGCGGCACCAGATGATCGCTTTTTCCCAAGCCGGGTACCGCTGCATCGCCGTCGATTACAGAGGGTACGGCGTGGA CGCCAAGTACGCAAACATCGTGGCGGATCTCGTTGCCATCTTGGACTTCCTCGCCATTCCCAAGGTGGTGCTCGTAGGAAAAGACTTCGGCAGCTTCGTT GCGTCGTGGTTCGAAGTTGTCCATCCGGAGAAGGTGCTGGGTTTAGTGAATCTGGGAGTTCCGTTCATGGTCCCGTTCAAAGATGCTTCCTTGGCCAATC GTGAATCTCTACCTGAAGGATTCTACGTGTCACGGTGGCGGGTACCGGGTCGTGCGGAGGCTGATTTCGGGCGGCTAGACGCGAAGACCGTGGTGAGAAA TGTGTACATTATGTTTTGTGGAAGTGAATTGCAGATCGCAGCTGAGAATCAAGAGATTATGGACTTGGTTGACCCGTCAACTCCCTTGCCGCCATGGTTC TCCGAGGAAGATCTCGATGCCTATGGAGCTTTGTACCGCAAATCTGGGTTTCGGACTGCCCTCCAGATGCCCTACAGATCATTCGACGAGTATATCGACA TACCGCCATCGGAGGTCAAAGTGAACGTTCCGGCGTTACTGATCATGGGAAGCAAAGATTACGTGTTGAAGTTTCCAGGAATGGAAGGCTACATCAACAA CAATGCGACTCAGTTCGTGCCGGACTTGAAGACTGTGTTCATAGCCGAAGGAAACCATTTCGTCCAGGAGCAGTTACCCGAAGAAGTGAACCAGCTGATC CTGGATTTCCTTCGAGCTCGAATCTGGCCATGA
AA sequence Show only first row Show all	>Lus10018477 pacid=23162092 polypeptide=Lus10018477 locus=Lus10018477.g ID=Lus10018477.BGIv1.0 annot-version=v1.0 MDQIEHKFVEVEGGLKLHVAEIGSGEKAILFLHGFPEIWYSWRHQMIAFSQAGYRCIAVDYRGYGVDAKYANIVADLVAILDFLAIPKVVLVGKDFGSFV ASWFEVVHPEKVLGLVNLGVPFMVPFKDASLANRESLPEGFYVSRWRVPGRAEADFGRLDAKTVVRNVYIMFCGSELQIAAENQEIMDLVDPSTPLPPWF SEEDLDAYGALYRKSGFRTALQMPYRSFDEYIDIPPSEVKVNVPALLIMGSKDYVLKFPGMEGYINNNATQFVPDLKTVFIAEGNHFVQEQLPEEVNQLI LDFLRARIWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10018477 [exp]	0	1
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	3.0	0.9092
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	5.2	0.8612
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	5.5	0.8693
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	5.9	0.8795
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	6.0	0.8908
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	8.5	0.8837
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	9.2	0.8687
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	9.4	0.8641
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	11.0	0.8580
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	12.6	0.8839

Compare expression of checked genes

Lus10018477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.