Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11060 259 / 6e-74 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) AT1G61030 241 / 3e-68 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011196 [exp] 1134 / 0 AT1G11060 614 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10001211 [exp] 619 / 0 AT1G11060 660 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Lus10005857 [exp] 590 / 0 AT1G11060 653 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039900 [exp] 288 / 1e-84 AT1G11060 662 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1) Potri.011G049300 [exp] 283 / 7e-83 AT1G11060 674 / 0.0 WAPL (Wings apart-like protein regulation of heterochromatin) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07814 [flax] [poplar] WAPL Wings apart-like protein regulation of heterochromatin
Representative CDS sequence Show only first row Show all	>Lus10018478 pacid=23162154 polypeptide=Lus10018478 locus=Lus10018478.g ID=Lus10018478.BGIv1.0 annot-version=v1.0 ATGAACGTCAGAACCTACGGCCGCCGAACAAGAGACGCCGACGACAACGGCGACTACGACTCCTTCTCACTCTCCCAAGAGAACCCATCTCAGCAGAATT TCCGCGATTTCCACTTCCCCTCTCAAGAATCCTCTTCGTTCTTTCCGTCCTCCTCTTCCGTCTCATCTTCCTCCTTCGATCCAGATCCGTACGCCTTCAG TCCGTCGTCTTTCCTCGACAATTCGCCGCCCCCGAGGAAGTCGAAGAAGCCGAGAAAAGGGCAGACTAGTGACCACGCCGGGGCAACCCTAACTTCTACG CTGATGGAGGCGCAGGAGTTTGGGGAGATGGTGGAGCATGGCGACGATGTTGATTTCGCCGTTGATGGGTTGAGGAATAGAGGCGGCGGAGGAGGAGTTA GAATCCGGCGGGCGAGCTTGCTGTCCCTCTTGTCGATTTGTGGCACGCCTCAGCAGCGTCGAAATCTCAGGGCTCAAGGGACGGTGAAACCTATAATGGA AGCTCTCTTGAGTCTTAGCCTTGATGATGCACCCAGCAATCTAGCAGCTGCAGCTCTTTTGTATCTTCTCAGCAGTGATGGGCAAGACGATCGCATGTTG GATTCATCTCGTTGCATTCGGTTCTTGCTCAAGCTGTTGAAACCAGTTCTTTCTGTTGCGGCCGAGGACAAGACTCGAAGTTTTGGCAGTAAGCTTTTAG GGATAGGCAAAAACTTGAATTTGAATGTCTCACGCGATACAACCAAAGTGGTGACGATGGATTCAGGCTCTTCTTCTGCTATTATAGTCAAAGTTGAGGA AATTCTTATTAGTTGTGAGGAGATTAAGTCTCGGTTTTGGCTCAACAACAAGGGAGTTGAGAAGCCCGGATTGATGTCAAAGTTTGTAGCTCTGCTGATC ATTGAGAAAGCTTGCTTGCTTAAGATATCTCTTGAAGATACGTCGGGGTTGGTAAGGAACATGGATGGGAACTTTAAGGAGAAGTTACGAGAGCTTGGAG TACTTGATGCTGTCTTTGAAGTCGCCATGAACTGCCACTCTGCTATTGAGGCGAATCTTGAATCAACTGCCATGCTGAGCCTTGTGATGCTTTTGAAATG CTTAAAGATCATGGAAAATGCCACATTAATGAGTAAAGAGAACCAGGATCATTTACTTGCAATGAGAAAGAACTCTAGCTCTCATGGTTGCCGGATATCG TTTGCCAAGCTTATCATAAGTGTCATCAAGATCTTATCAGGTCTCTATCTTAGAAGCAGCGCTGGCTCGAACAATGGAGTAATATCCATCAGCTCATCAG AATCGGATTGCTGTACTGCAGAAGGGATCTCCCAGAAGAAATCGACAGCAAGACTCGCTCTTTCTGCTTCCATGGATGATGACAATCACCTTCTGAAGAT GAGGGTTCGTTCATCGATGTTCAGTTCAAGCAGTGAAACTACTAGTAATGGTTCTAGTAGGACAAGATGCAATCTTGTCGATTCTGGAAATGATTCCATG TGCAAGGATCCATTTGCATTTGATGAGGATGACTTGGAGCCATCAAAGTGGGATGCGCCATATTGTAAGCCAAAGAAGTCTCTTTCTCGGGCTGCGAAGA AAGCTGCAAAAGAACGTCAGACCGAGAGTCCCTCTGCAGTAACGGTTCAAGAAGAATCTATGAGTCTCGATGGAGATTCCAATTCGAGTGTTTCAGATGA GGAATTGTCTAGTATTGTATCTGAGTGTCTTCTTACTACTGTGAAGGTTCTGATGAATTTGACGAACGAAAATCCTGCTGGATGTCGGCAAGTTGGTGCC TGTAGAGGGTTGGAGGCTTTGTCTTTGCTGATCGCTGATCACTTCCCTTCGTTCGATTCATGCTCGATGAAAGAAGGTCCTCGTCTGACTGATCAAGAGT TGGATTTTCTCGTCGCGATATTGGGGCTCCTTATCAATCTGGTAGAGAAGGATGGTCAAAACAGGTCAAGGCTTGCATCAGCTAGCATCTCGTTAGCTCC AGGGTCAGAAGACGAGAGTTGTAAGGATGTAATCCCGCTGTTGTGTTCGATCTTTCTTGCGCACCAAGGCAAAGCTGATGATGATCAGTCTGAACAAGGA GATTGCATACAATGGGATGACGAAGCAGCTATGCTTGAAGGTGAGAAAGAAGCAGAGAAAACGATCGTAGAGGCTTACACCGCCCTGCTCCTCGCATTTC TCTCGACTGAAAGCAAGAGCACACGCGAGTCAATTGCTGATTGCCTCCCAAATCGCAGCATTTCATGTCTCGTTCCTGTCCTGGAAAGATTCGTGGCGTT TCATTTGACGTTGAACGTGATCTCGCCGGAGACTCACAAGGCAGTGAAGGCAGTGATTGAATCGTGTAGGCTGCCATGA
AA sequence Show only first row Show all	>Lus10018478 pacid=23162154 polypeptide=Lus10018478 locus=Lus10018478.g ID=Lus10018478.BGIv1.0 annot-version=v1.0 MNVRTYGRRTRDADDNGDYDSFSLSQENPSQQNFRDFHFPSQESSSFFPSSSSVSSSSFDPDPYAFSPSSFLDNSPPPRKSKKPRKGQTSDHAGATLTST LMEAQEFGEMVEHGDDVDFAVDGLRNRGGGGGVRIRRASLLSLLSICGTPQQRRNLRAQGTVKPIMEALLSLSLDDAPSNLAAAALLYLLSSDGQDDRML DSSRCIRFLLKLLKPVLSVAAEDKTRSFGSKLLGIGKNLNLNVSRDTTKVVTMDSGSSSAIIVKVEEILISCEEIKSRFWLNNKGVEKPGLMSKFVALLI IEKACLLKISLEDTSGLVRNMDGNFKEKLRELGVLDAVFEVAMNCHSAIEANLESTAMLSLVMLLKCLKIMENATLMSKENQDHLLAMRKNSSSHGCRIS FAKLIISVIKILSGLYLRSSAGSNNGVISISSSESDCCTAEGISQKKSTARLALSASMDDDNHLLKMRVRSSMFSSSSETTSNGSSRTRCNLVDSGNDSM CKDPFAFDEDDLEPSKWDAPYCKPKKSLSRAAKKAAKERQTESPSAVTVQEESMSLDGDSNSSVSDEELSSIVSECLLTTVKVLMNLTNENPAGCRQVGA CRGLEALSLLIADHFPSFDSCSMKEGPRLTDQELDFLVAILGLLINLVEKDGQNRSRLASASISLAPGSEDESCKDVIPLLCSIFLAHQGKADDDQSEQG DCIQWDDEAAMLEGEKEAEKTIVEAYTALLLAFLSTESKSTRESIADCLPNRSISCLVPVLERFVAFHLTLNVISPETHKAVKAVIESCRLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11060			WAPL (Wings apart-like protein...		Lus10018478 [exp]	0	1
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	2.0	0.8850
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	3.9	0.8884
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	6.7	0.8812
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	6.9	0.8667
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	8.5	0.8616
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	11.7	0.8774
AT3G45830			unknown protein		Lus10018121 [exp]	11.8	0.8720
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	12.4	0.8585
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	13.7	0.8711
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	16.1	0.8585

Compare expression of checked genes

Lus10018478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.