Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21670 1053 / 0 FRY2, FLP1, ATCPL1, CPL1 FIERY 2, C-terminal domain phosphatase-like 1 (.1) AT5G01270 541 / 1e-179 CPL2, ATCPL2 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011195 [exp] 1754 / 0 AT4G21670 1044 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Lus10027766 [exp] 530 / 3e-170 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040000 [exp] 1278 / 0 AT4G21670 1139 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.011G049400 [exp] 1264 / 0 AT4G21670 1108 / 0.0 FIERY 2, C-terminal domain phosphatase-like 1 (.1) Potri.016G114600 [exp] 562 / 0 AT5G01270 923 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099402 [exp] 187 / 4e-54 AT5G01270 294 / 2e-95 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Potri.006G099302 [exp] 182 / 7e-50 AT5G01270 363 / 6e-119 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10018479 pacid=23162098 polypeptide=Lus10018479 locus=Lus10018479.g ID=Lus10018479.BGIv1.0 annot-version=v1.0 ATGTCGAAATCGGCGGTGGTTTATAGAGGGGACGAGTTGTTGGGGGAAGTGGAGATTTACGCGCAGGATGAAGTTTTGGTGGAAGGGGAGACGAAGAGCA GCAGCAGTTACAATTTGAGGAACAACAAGAACAGAGTGATAATCGACGAGACGTTGGTCTCGGGGAAGGAAATCAGAATAACAGACTTCTCCCCGCCGAG CGAGAGGTGTCCGCCGCTGGCGGTGTTGCATACGATTAGTTCGACTGGGATTCTGTTCAAAATGGAGCCCAGGAATCCGCTGACACAACAGAGTACTCCG CTCCATTTCTTGCACTCCACACTTATTCAAGACAACAAGACTGCAGTGATGAGGGTAGGAGCAAACGAGCTCCATTTGGTTGCGTTGCATTCCAGAAATG GTGGGGACTGTCCATGTTTCTGGGGATTCCTCGTTGCAGTGGGACTCTATGAGTCTGGTTTAACCATGCTGAACTTGAGATGTCTCGGCATTGTATTTGA TCTCGACGAAACACTTATAGTGGCAAACACAATGCGGTCCTTTGAAGATAGAATCGATGGTCTGCAGAGGAAAATAAGTACAGAGGTGGACCCGCAGCGG GTTGCAGGTATGCTTGCAGAAGTAAAGCGTTATCAGGATGACAAGAGCATATTGAAGCAATATGTGGAGAATGATCAAGTTATTGAGAATGGGAAGGTGA TAAGGACTGTGTCTGAGATTGTCCCTCCTGCTTCTGATAGCCATCAGCCTATAGTGCGCCCATTGATTCGGTTACAGGAGAAGAACATTATCTTGACTCG CATCAATCCGCAGATTCGGGACACAAGTGTTCTTGTGAGGTTGAGACCTGCATGGGAGGATCTGAGAAGCTACTTGACTGCCAGAGGTCGCAAGCGGTTT GAAGTTTATGTTTGCACAATGGCTGAAAGAGATTATGCCTTGGAAATGTGGAGGCTTCTTGATCCAGAGTCGAATTTAATAAACTCAAAAGAACTCTTGG ACCGCATTGTATGTGTCAAAGCTGGTCTAAGGAAAGCTTTGTTCAATGTCTTCCAAGATGGAACCTGCCATCCTAAGATGGCATTGGTGATTGATGATCG TTTGAAAGTTTGGGATGATAAAGATCAGCCTCGTGTGCATGTCGTTCCAGCATTTGCTCCATATTATGCTCCCCAAGCTGAAGCAAATAATGCGATTCCA GTTTTATGTGTTGCAAGAAATGTTGCATGCAATGTCAGAGGCGGTTTTTTCAAAGAGTTTGATGAGGGCCTTCTACAGAAGATACCTGAGATTTCATATG AAGACAATATTCTTGATATTCCTTCTCCTCCTGATGTGAGCAATTACTTGGTTTCTGAGGATGATGCCTCATCTTCAAGTGGAGTTAGAGATCAAGTTCC TTTTGATGGCATGGCAGATGCTGAAGTTGAACGACGAATGAAGGAAGCAGCTTCAGCTTCTTCAATCTTACCTCCAGTAGCTTCAGCTTCTTCAGTCTTA CCTCCCGCAGTCCCCATTATTGACCCAAGGCTTGTTTCATCTCTCCAGTACACAGTGGCATCTTCTTCAAGCTCAATTGCCATGCCAATATCACAGCCGC CTGTTGTGCCGTTTTCTAATGTCCAGTTTCCTCAGGCACCTTCTTTAACTAAGCCTATAGGTCTGACAGATCCCAGCTTCTCTGGTTCTCCTGCTAGAGA AGAAGGTGAGGTTCCTGAATCTGAGCTAGACCCTGATACGAGAAGGCGACTACTTATATTGCAACATGGGCAAGATACGAGAGATGTTCCGCCAAGTGAG CCTCCATTTCCAGTAAGACCCCAGATACCGGTTCCAGCTCCACGTGTGCCGTCGCAATCTCGTGGAAATTGGGTTCCTGTGGAGGAAGAGATGAGCCCTA GGCAAATGAACAGATCGATGCCTAGAGAATATCCTCCTGAACAAGAGCCGATGCATATTGAAAAGCACCGACCTCATCATCCCTCCTATTTCCCAAAGGT CGATGGTCCGATTCCTTCGGATAGAATGATTCATGATAATCAAAGATTACCAAAAGAGTTACAGGCAAATTACAGAGATGACAGACCAAGGCTGAACCAG CCTTGGTCCGGTTACCAGCCTTTCCCAGGTGAGGCTGTACCATTTGGTCGCTCATCTAGCAACAGGGATATTGACTTTGAACAGGAAAGACTTGTATCGG GTGGTGAATCTTCTGTGGGAGTGTTGCAGGATATTGCAATGAAGTGTGGTACCAAGGTGGAGTTCAGACCTTCTTTAGTTGCTAGCAGAGATCTGCAGTT TTCTATCGAGGTTTTGTTTGCGGGAGACAAGGTTGGTGAAGGTATTGGCAGGACAAGACGGGAAGCGCAACGTGAGGCAGCTGATGGTTCTCTGAGAAGT CTTGCTAGCATGTACACGTCACGTTCCAAGACAGATTCTACACCGTTACATGGAGATGCACCGAGATATTATGGTCCGAACAACAATGGTTTCTCTGGTA ACGCGAGTTCATTTGACAATCATCCAAAAGATGATGCTGGTCCATTTTCACATCTGGATCCAAGATTAGAAGGCTCTAAGCATTTAACGGGTCCAGTTTC GGCGCTCAAAGAATTTTGCATGATGGAAGGCCTTGGGATGAGATTCCTCCCAGATACTCCTGTTAATTCGTACCAGAAAGACGAGATCCATGCACAGGTT GAAGTAGATGGTCAGGTTATGGGGAGGGGGATCGGATCTTCCTGGGACGAAGCTAGGATGCTGGCTGCTGACCGGGCTCTCGGAAGTCTACGGTCAATGT TCGGTCAATCTACGCACAAACGGCAGGGTTCACCTAGGTCCTTGCAAGGGATGTCGAGCAAACGTATGAAGCCCGAATTCCCACGAATGTTGCAGCATCA GCCTCGAATGCCGCCCTCTGCTCGATACTCGAAGAATGCCTCTGCTGTCCCTTGA
AA sequence Show only first row Show all	>Lus10018479 pacid=23162098 polypeptide=Lus10018479 locus=Lus10018479.g ID=Lus10018479.BGIv1.0 annot-version=v1.0 MSKSAVVYRGDELLGEVEIYAQDEVLVEGETKSSSSYNLRNNKNRVIIDETLVSGKEIRITDFSPPSERCPPLAVLHTISSTGILFKMEPRNPLTQQSTP LHFLHSTLIQDNKTAVMRVGANELHLVALHSRNGGDCPCFWGFLVAVGLYESGLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIDGLQRKISTEVDPQR VAGMLAEVKRYQDDKSILKQYVENDQVIENGKVIRTVSEIVPPASDSHQPIVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRF EVYVCTMAERDYALEMWRLLDPESNLINSKELLDRIVCVKAGLRKALFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIP VLCVARNVACNVRGGFFKEFDEGLLQKIPEISYEDNILDIPSPPDVSNYLVSEDDASSSSGVRDQVPFDGMADAEVERRMKEAASASSILPPVASASSVL PPAVPIIDPRLVSSLQYTVASSSSSIAMPISQPPVVPFSNVQFPQAPSLTKPIGLTDPSFSGSPAREEGEVPESELDPDTRRRLLILQHGQDTRDVPPSE PPFPVRPQIPVPAPRVPSQSRGNWVPVEEEMSPRQMNRSMPREYPPEQEPMHIEKHRPHHPSYFPKVDGPIPSDRMIHDNQRLPKELQANYRDDRPRLNQ PWSGYQPFPGEAVPFGRSSSNRDIDFEQERLVSGGESSVGVLQDIAMKCGTKVEFRPSLVASRDLQFSIEVLFAGDKVGEGIGRTRREAQREAADGSLRS LASMYTSRSKTDSTPLHGDAPRYYGPNNNGFSGNASSFDNHPKDDAGPFSHLDPRLEGSKHLTGPVSALKEFCMMEGLGMRFLPDTPVNSYQKDEIHAQV EVDGQVMGRGIGSSWDEARMLAADRALGSLRSMFGQSTHKRQGSPRSLQGMSSKRMKPEFPRMLQHQPRMPPSARYSKNASAVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10018479 [exp]	0	1
AT5G07940			unknown protein		Lus10021162 [exp]	6.7	0.8866
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	10.6	0.8843
					Lus10034709 [exp]	15.5	0.8434
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	15.9	0.8767
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	16.4	0.8690
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10025263 [exp]	17.1	0.8784
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	20.0	0.8686
					Lus10021411 [exp]	25.5	0.8345
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	26.1	0.8487
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	27.5	0.8462

Compare expression of checked genes

Lus10018479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.