Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20760 196 / 2e-60 Clathrin light chain protein (.1) AT2G40060 164 / 5e-49 CLC2 clathrin light chain 2, Clathrin light chain protein (.1) AT3G51890 159 / 4e-47 Clathrin light chain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011194 [exp] 494 / 1e-177 AT2G20760 235 / 2e-75 Clathrin light chain protein (.1) Lus10018582 [exp] 174 / 1e-51 AT2G20760 195 / 2e-59 Clathrin light chain protein (.1) Lus10039815 [exp] 164 / 4e-48 AT2G20760 189 / 2e-57 Clathrin light chain protein (.1) Lus10030401 [exp] 155 / 3e-45 AT2G40060 197 / 2e-62 clathrin light chain 2, Clathrin light chain protein (.1) Lus10004389 [exp] 154 / 3e-45 AT2G40060 220 / 9e-72 clathrin light chain 2, Clathrin light chain protein (.1) Lus10040187 [exp] 152 / 4e-44 AT2G40060 211 / 3e-68 clathrin light chain 2, Clathrin light chain protein (.1) Lus10037839 [exp] 0 / 1 AT2G40060 135 / 4e-42 clathrin light chain 2, Clathrin light chain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049500 [exp] 228 / 7e-73 AT2G20760 201 / 2e-62 Clathrin light chain protein (.1) Potri.004G040100 [exp] 228 / 1e-72 AT2G20760 216 / 7e-68 Clathrin light chain protein (.1) Potri.019G102000 [exp] 208 / 4e-64 AT2G20760 212 / 2e-65 Clathrin light chain protein (.1) Potri.016G114700 [exp] 178 / 2e-54 AT2G40060 217 / 2e-70 clathrin light chain 2, Clathrin light chain protein (.1) Potri.008G066800 [exp] 163 / 2e-48 AT2G40060 191 / 3e-60 clathrin light chain 2, Clathrin light chain protein (.1) Potri.010G190400 [exp] 160 / 3e-47 AT2G40060 215 / 1e-69 clathrin light chain 2, Clathrin light chain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01086 [flax] [poplar] Clathrin_lg_ch Clathrin light chain
Representative CDS sequence Show only first row Show all	>Lus10018480 pacid=23162216 polypeptide=Lus10018480 locus=Lus10018480.g ID=Lus10018480.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTCGACGACGCGTATGGAATCGACGGAGAAGTGGTCAACGAGACGAACCACGGATCCTTCCACGAAGACGACGACCAGGAGAGCTACTCCA CCAACTTCGGCTCCTACTCCAACTTCGCCAGCAGCGGAGCGCCGGAGTTCTCAAGTGGAATGGATGTGCCGGTGGATCAGCAACCGGCTGGCGAGGGATT CGGATTCGGATCTTCCTCGGCTGAGCTGGATCCAGCTCCTTTCGGCTCGATCCACGTGGAGAACGGCAACGGGAATGGATACGGCGAAGCTGATGAGGAT TTGTTTACTTCGGATGGTCCTGTGCTGCCTCCGCCTACTGAGATGCAGGAGGAAGGAGCTGCTCTTCGCGAATGGCGGCGTCAGAACGCAATCTACCTTG ACGAGAAGGAGAAGAAAGAGAAGGAAATGAGGCAGCAGATAATTGAAGAAGGCGAGGAGTACATCCGCGCCTTCTATGAGAAGAGGACGCTCAACATCGA GACGAACAAGACCTCGAACAGGGAGAGGGAGAAGATATCGTTGGCGAATCAGGAGAAGTTCCACAAGGAAGCCGACAAGCAGTACTGGAAGGCAATCGCC GAGATCATCCCTTACGAGGTCCCCAACATCGAGAAGAAGAGAGGCAAGAAAGAGCAGGACAAGAAACCAGGCATAACCGTCCTGCAAGGACCAAAACCCG GAAAACCCACCGATCTCTCGAGGATGCGACAGATCCTCGTGAAGCTGAAACACACCCCTCCACCACACATGGTCCCTCCTCCCCCACCTGCCCCAGCCAC CACCAAGGACGGGAAGAAGACTACAACAAAGGATGCCAAGACTGGGAAAGAAAATGTCGCGAAAAGCTCAGATGCTAATGGCTCTTCTCACCCGCCCGAG GTCACCGCTGCTGTGGACGAACAGCCCGCCACAGCAGAGCCAGTCATCAGCACAGAAGTACCGGAGCCGACTCCAAGTGCCTAA
AA sequence Show only first row Show all	>Lus10018480 pacid=23162216 polypeptide=Lus10018480 locus=Lus10018480.g ID=Lus10018480.BGIv1.0 annot-version=v1.0 MASFDDAYGIDGEVVNETNHGSFHEDDDQESYSTNFGSYSNFASSGAPEFSSGMDVPVDQQPAGEGFGFGSSSAELDPAPFGSIHVENGNGNGYGEADED LFTSDGPVLPPPTEMQEEGAALREWRRQNAIYLDEKEKKEKEMRQQIIEEGEEYIRAFYEKRTLNIETNKTSNREREKISLANQEKFHKEADKQYWKAIA EIIPYEVPNIEKKRGKKEQDKKPGITVLQGPKPGKPTDLSRMRQILVKLKHTPPPHMVPPPPPAPATTKDGKKTTTKDAKTGKENVAKSSDANGSSHPPE VTAAVDEQPATAEPVISTEVPEPTPSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	0	1
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	1.0	0.9687
AT3G12650			unknown protein		Lus10015695 [exp]	2.2	0.9204
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	2.4	0.9409
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	3.3	0.9113
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	4.9	0.9223
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	5.5	0.9230
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	6.0	0.9190
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	6.3	0.8861
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	7.0	0.9154
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	7.1	0.9129

Compare expression of checked genes

Lus10018480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.