Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09010 410 / 2e-141 Protein kinase superfamily protein (.1) AT1G16670 348 / 2e-117 Protein kinase superfamily protein (.1) AT1G56145 322 / 1e-100 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 321 / 7e-100 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 318 / 4e-99 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 318 / 1e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 315 / 9e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 311 / 1e-96 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 310 / 2e-96 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 310 / 1e-95 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011193 [exp] 724 / 0 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10001212 [exp] 516 / 1e-179 AT3G09010 384 / 2e-128 Protein kinase superfamily protein (.1) Lus10004825 [exp] 403 / 1e-138 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10002494 [exp] 373 / 2e-126 AT3G09010 462 / 3e-162 Protein kinase superfamily protein (.1) Lus10042460 [exp] 352 / 9e-119 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 352 / 2e-118 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042851 [exp] 325 / 9e-108 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10028149 [exp] 321 / 1e-106 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10019933 [exp] 315 / 2e-104 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040200 [exp] 560 / 0 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 533 / 0 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 421 / 7e-146 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 343 / 2e-115 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 336 / 1e-112 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 333 / 2e-111 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 331 / 2e-109 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 323 / 1e-107 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 327 / 5e-102 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G082900 [exp] 325 / 2e-101 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10018481 pacid=23162184 polypeptide=Lus10018481 locus=Lus10018481.g ID=Lus10018481.BGIv1.0 annot-version=v1.0 ATGAGTTGCAGCTGCTTTGGTTCCACGGCCGTTCGTCGGAAGCACCGCGACATCGGCAGCTCAGGGGATCGCAACGGCGTTGATGGTGATCTGCTCCAGG ATGTCAACCATATAGCCTACAATACGCTGAGATCCGCGACGGACGATTTCGATCCGAGGAAGAAGATCGGGCAAGGTGGGTTTGGGACTGTTTACAAGGG GACTTTAAAAAGTGGGAAGCAGATTGCTGTGAAAACCCTCTCTGTACATTCGAGGCAAGGGGTTCGAGAGTTCTTGAACGAGATCAGGGCAATGTCGAAG GCTAAGCATCCGAACCTCGTGGATTTGGTAGGGTGCTGTGTTCAAGGAGCTAACCGGATACTAGTCTACGAGTTTGTAGAAAATAACAGTCTTGAGTACT GTTTGTTAGGTGCGAGAAATCCGAATGTGAAACTAGACTGGGGACAGCGAGCTGCCATTTGCTTGGGAATTGCTCGAGGCCTTTCTTATCTCCATGAAGA GCTGGTGCCACACATTGTTCATAGGGACATCAAAGCGAGCAATATTCTCCTGGACAGGGATTTGAACCCGAAAATCGGTGATTTCGGGTTGGCTAAACTC TTTCCGGACGACATTACTCATATCAGCACACGGATTGCAGGAACCACTGGCTATTTGGCCCCAGAGTATGCACTGGGTGGTCAACTAACCAAGAAGGCCG ACGTATATAGCTTTGGTATCCTTGTTCTCGAGACTATCAGTGCCAGAAGCAGTTCGAGGTGCAGTTGGGGAGGAACGCTAAAGCTCCTGCTAGAACAGGC ATGGGAAATGTACGAAGAAGGAAGGCTCCTCGAGCTGGTGGATCCAGAGATGGGAGAGTTCCCGGAAGAAGAAGTCGTACGGCACATGAAAGTAGCCTTT TTCTGCACGCAAGCCACGGCAAACAGGAGACCCTCGATGAGCCAAGTCGTTGACATGCTATCGTCGACAAACATCCGACTCAATGACAAGCTGCTCACCG CCCCGGGCTTCTTCCCCGACTCAGACAGTGTAAATAACAAGAAGTCATCTGCACAGTCTTCCGGCCAGCACCTTAGCAGCTCGGTTCCCGTTACAATTAC TGAAGTCGCGCCTAGGATATCTGATCAGAAAGGAGAAGTTTGTAATAGAAAAGAAGAAATTTTTTTTGGTAATGTTGCTGTGGCTTATACGATCTTATGT AAGGTTATCGTCCATACCGATGGTTCGGTTCTCCAACCCCCGGGAGGAGGACTTCTCCGGAACCCGATGGGTATTTGTCAGGAAGCATTTGCGGCGAACT TTGGACTCTACACATCACTCGTGCAGAACTTCGAGTAG
AA sequence Show only first row Show all	>Lus10018481 pacid=23162184 polypeptide=Lus10018481 locus=Lus10018481.g ID=Lus10018481.BGIv1.0 annot-version=v1.0 MSCSCFGSTAVRRKHRDIGSSGDRNGVDGDLLQDVNHIAYNTLRSATDDFDPRKKIGQGGFGTVYKGTLKSGKQIAVKTLSVHSRQGVREFLNEIRAMSK AKHPNLVDLVGCCVQGANRILVYEFVENNSLEYCLLGARNPNVKLDWGQRAAICLGIARGLSYLHEELVPHIVHRDIKASNILLDRDLNPKIGDFGLAKL FPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGILVLETISARSSSRCSWGGTLKLLLEQAWEMYEEGRLLELVDPEMGEFPEEEVVRHMKVAF FCTQATANRRPSMSQVVDMLSSTNIRLNDKLLTAPGFFPDSDSVNNKKSSAQSSGQHLSSSVPVTITEVAPRISDQKGEVCNRKEEIFFGNVAVAYTILC KVIVHTDGSVLQPPGGGLLRNPMGICQEAFAANFGLYTSLVQNFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09010			Protein kinase superfamily pro...		Lus10018481 [exp]	0	1
AT3G56720			unknown protein		Lus10038984 [exp]	8.4	0.8360
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	15.5	0.8035
AT4G36980			unknown protein		Lus10009350 [exp]	17.3	0.8155
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10042852 [exp]	17.7	0.8179
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	20.1	0.8062
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	21.0	0.7930
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	30.7	0.7710
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	31.5	0.8147
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10043187 [exp]	34.0	0.7554
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	37.5	0.7820

Compare expression of checked genes

Lus10018481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.