Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04920 806 / 0 AtSFR6, SFR6 sensitive to freezing 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011192 [exp] 1026 / 0 AT4G04920 1903 / 0.0 sensitive to freezing 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049700 [exp] 867 / 0 AT4G04920 1790 / 0.0 sensitive to freezing 6 (.1.2) Potri.004G040300 [exp] 852 / 0 AT4G04920 1813 / 0.0 sensitive to freezing 6 (.1.2) Potri.004G040400 [exp] 842 / 0 AT4G04920 1764 / 0.0 sensitive to freezing 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018482 pacid=23162172 polypeptide=Lus10018482 locus=Lus10018482.g ID=Lus10018482.BGIv1.0 annot-version=v1.0 ATGAGCAATCAGCCACTTCCTCAGCAGGAGCAGGAGGAAGAAGATGACGTGGATGTTGACGTAGAAGAGGAGGAGGAAGTGGAAAAGGAAGAAGCGGGCG GAATTAGCAAGGAGCCGGACGAGGACGGCGTTGCTCAGGCCTTGGAAGTTGCAGCGAAGGCGGCTGCGGCTGCGGCGGCGGTAGCAGTGACGGCGGTGGT AGGATCGGAGAAGGTGGAGGTGGTGAGTGGAGGCGAGGAGGAAGAGAGTGTGGAGAAAGTTGACGATCCGATGGAGGAGGATTCGCTTGGTCCGGCCACT GTGTTCAGTATCAAGCTCAAGCAGCCCAGGTCGAATTTGATGCATAAGATGAGCGTGCCTGAGCTTTGTCGCAATTTCAGTGCTGTTGCTTGGTGTGGGA AGTTGAATGCTATAGCATGTGCATCGGAAACCTGTGCAAGAATTCCAAGTTCCAATGCGAATCCTCCATTTTGGATCCCCATACACATTGTCATCCCGGA GCGGCCAACTGAATGTGCTGTTTTTAACGTAATAGCAGATTCACCTCGCGATTCTGTTCAGTTTATTGAATGGTCGCCTACCTCGTGCCCTCGTGCCTTG CTTATCGCTAATTTCCATGGGAGGATAACTGTTTGGACACAACCTTCTCATGGTCCTGCTAACTTGGTACGTGATGCCAGTTGCTGGCAGCGCGAACATG AATGGCGGCAAGATATAGCAGTTGTTACTAAGTGGCTATCTGGCGTTTCTCCATATAGGTGGCTATCTTCGAAATCGAGTGCCAGTTCAAATCCAAAGTC AACTTTTGAGGAAAAGTTCCTTTCACAGCACTCTCAGAATTCAGCGAGGTGGCCCAATTTTCTTTGTGTGTGCTCTGTTTTCTCATCCGGCTCAGTACAA CTTCATTGGTCGCAATGGCCAGCTAGTCAAAGCAATACATCACCAAAATGGTTTTCCACTAGCAAAGGACTTCTGGGCGCTGGACCTAGCGGGATCATGG CTGCTGATGCTATCATAACGGATAGTGGTGCTATGCATGTTGCTGGTGTTCCTATCGTCAATCCTTCTACTGTTGTAGTGTGGGAAGTTACCCCTGGACC TGGAACTGGTCTTCAAGCAACTCCAAGAACGAGTTCTAGTTGCGGTGTCCCTCCTTCATTGAATCCTCCCAATTGGGCAGGTTTTGCTCCTTTGGCTGCT TATTTGTTTAGTTGGCAAGAATATCTGATATCTGAAGTAAAGCAAGGGAAGAAACATACAGATAAAGATTTATGTGATGGTTTAGCACTTCATTGTTCTC CTGTTTCGAACTTTTCTGCTTATGTGAGTCCTGAGGCTGCAGCTCAATCGGCAACAACCACTACCTGGGGATCTGGAGTCACTGCTGTTGCTTTTGATCC TACTCGTGGTGGCTCTGTGATAGCAGTTGTGATAGTCGAAGGGCAATATATGTCTCCTTACGATCCGGATGAGGGCCCTTCTATAACAGGATGGAGGGTG CAACGGTGGGAATCATCTCTTCAGCCTGTCGTTCTTCATCAAATATTCGGAAGTCCGACATCCAGTTTCGGTGGCCAGGCACCAATGCAAACTGTATGGG TGTCCAAAGTGGACACTAGCATAGCGCCGACTAATGATTTTAAAAATCATCAAGAAGCTGTGGCAGGACCAAACTCCGATGTCAAAAAAACAACCGATGT GGGCGTCCAAACTTCGCCCCTCAAGGAATGCACCATATTAAAGATAATTCGAGTTCTCCCTCCTGCTGTCCCAAGCAGTCAAATAAAGGCCAACTCCGCG ACTTGGGAACGTGCAATTGCAGAAAGGTTTTGGTGGAGCCTATTGGTTGGCGTTGATTGGTGGGATGCTGTTGGGTGTACGCAGAGTGCTGCTGAGGATG GCATTGTTTCACTGAACAGTGTCATTGCGGTCCTGGATGCAGATTTCCACTCTCTTCCCTCTGTACAGCATAGACAACAGTATGGCCCGAGCCTTGACAG GATCAAATGTAGGCTATTGGAAGGCATTGAGTCTGCCTTGATCAATCCTTCGGCATTAGTTGCTGAACCATGGCAGGCATCTGGCGAGACATTATCCGGT ATTGATACTGAAGCAATGGCTGTTGATCCAAGCCTCGTCCCAAGTATACAGGCATATGTTGATGCAATTCTCGATCTATCGTCACATTTTATCACTCGTT TGCGGCGGTATGCGAGTTTCTGTCGCACATTAGCTAGCCATGCTGTTACTGCAGGCACGGGGAACAATCGCAACATGGTGACTAGTCCTACCCAGAGTGC GGCATCCCAAGCAACTACTCCCGGTGGTCAAACTACCACAACAAATGCCACGGGAAGCACTCAGGTGCAAGCTTGGGTGCAAGGAGCTATTGCTAAGATT AGTAGCACATCAGACGGGGTACCTAGTTCTGCTCCAAACCCTATTAGCGGTCCACCTCCCTTTATGCCCATAAGCATCAACACCGGGACATTCCCGGGAA CTCCTGCTGTTCGGCTTATCGGAGACTGCCATTTTGTTCACAGATTATGCCAGCTTCTGCTCTTTTGCTTCTTCTTTCGTAGAACACAACTTACACGCTC TGGAGCTGTCTCGCAGAGAAATAGTGATTCTAATATGCAAAAACCTCAGCCTGGTCTCCCCGGCAAAGTTGAGGAGTCCAATGCTGCTTATGGGAAACCG GCGACAGCTATGGTTAGTAGAGCAGAGGAAGGCCCAGGAGCACGAAGTGGTCAGATTGTGCCTGGAACCAAAGGAGCTGAAGACGGACCGGCTGGCCGTT CCCGACTAGGCTGTGGCAATGCTGGTCAGGGATACACTTTCGAAGAGGTGAAGGTACTTTTTCTTATTCTCATGGACCTTTGTCGGCGAACAGCAGCTCT GGCACATCCGTTGCCAGTTTCGCAAGTGGGAAGTAACAACATTCAGGTCCGGCTGCATTATATCGATGGCAATTATACCGTCTTGCCAGAAGTTGTAGAA GCATCTCTTGGCCCACATATGCAGAATATGCCCAGGCCTAGAGGAGCTGATGCTGCCGGTCTCTTGCTACGTGAGTTGGAACTTCACCCGCCATCCGAAG AGTGGCACCGACGCAATATGTTTGGCGGCCCGTGGTCTGATCCAGAGGACGTAAATTCCCCCGAGGAGACACCCAAATCTTCCGACTTGCTAGATTTCAG CTCACTAGAGAATTGCGATGTGCATTACGGCCCTCACGGTATCTGGCCCAAGAGGCGCAGGTTGTCCGAGAGAGACGCTGCTTTTGGCTTGAACACATCG GTCGGCCTAGGAGCTTATCTCGGGATAATGGGATCTCGTAGAGACGTGGTTACTGCTCTTTGGAAGACCGGCCTGAAAGGAGATTGGTTCAAGCCTTTGC TTCGCCAAGCACCACAAACCCCGGTAGTTCTAATGAACGTGAAACGTGGTGGATCAGTCGTTGGGCTTATGGATGTCCCATGTGCGGGGGGACATGGGTT CGGGTTGTGTAGTCGAGATTTGGGAACGAAACTTGATGTCATTCAAATTTCACCCGAAACAATCGAGACTCTGGTCTCTTACCTCCTATACCCTGAGCCT GTATATTCGGCGTGTTTTGACATCATTGACGGCTCAGCATGGTACCGGCAGAGCATATCTTCCTGA
AA sequence Show only first row Show all	>Lus10018482 pacid=23162172 polypeptide=Lus10018482 locus=Lus10018482.g ID=Lus10018482.BGIv1.0 annot-version=v1.0 MSNQPLPQQEQEEEDDVDVDVEEEEEVEKEEAGGISKEPDEDGVAQALEVAAKAAAAAAAVAVTAVVGSEKVEVVSGGEEEESVEKVDDPMEEDSLGPAT VFSIKLKQPRSNLMHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRAL LIANFHGRITVWTQPSHGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSASSNPKSTFEEKFLSQHSQNSARWPNFLCVCSVFSSGSVQ LHWSQWPASQSNTSPKWFSTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGTGLQATPRTSSSCGVPPSLNPPNWAGFAPLAA YLFSWQEYLISEVKQGKKHTDKDLCDGLALHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRV QRWESSLQPVVLHQIFGSPTSSFGGQAPMQTVWVSKVDTSIAPTNDFKNHQEAVAGPNSDVKKTTDVGVQTSPLKECTILKIIRVLPPAVPSSQIKANSA TWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYGPSLDRIKCRLLEGIESALINPSALVAEPWQASGETLSG IDTEAMAVDPSLVPSIQAYVDAILDLSSHFITRLRRYASFCRTLASHAVTAGTGNNRNMVTSPTQSAASQATTPGGQTTTTNATGSTQVQAWVQGAIAKI SSTSDGVPSSAPNPISGPPPFMPISINTGTFPGTPAVRLIGDCHFVHRLCQLLLFCFFFRRTQLTRSGAVSQRNSDSNMQKPQPGLPGKVEESNAAYGKP ATAMVSRAEEGPGARSGQIVPGTKGAEDGPAGRSRLGCGNAGQGYTFEEVKVLFLILMDLCRRTAALAHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVE ASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDVNSPEETPKSSDLLDFSSLENCDVHYGPHGIWPKRRRLSERDAAFGLNTS VGLGAYLGIMGSRRDVVTALWKTGLKGDWFKPLLRQAPQTPVVLMNVKRGGSVVGLMDVPCAGGHGFGLCSRDLGTKLDVIQISPETIETLVSYLLYPEP VYSACFDIIDGSAWYRQSISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Lus10018482 [exp]	0	1
AT5G56240			unknown protein		Lus10008344 [exp]	9.6	0.7360
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Lus10012755 [exp]	17.2	0.6966
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	27.7	0.6997
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	28.6	0.7146
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10000390 [exp]	32.5	0.6813
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	48.6	0.6822
AT2G21630			Sec23/Sec24 protein transport ...		Lus10019516 [exp]	63.9	0.6470
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	68.6	0.6530
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10035695 [exp]	71.4	0.6605
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031797 [exp]	71.7	0.6629

Compare expression of checked genes

Lus10018482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.