Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47960 584 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011192 [exp] 851 / 0 AT4G04920 1903 / 0.0 sensitive to freezing 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G040500 [exp] 684 / 0 AT2G47960 578 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06159 [flax] [poplar] DUF974 Protein of unknown function (DUF974)
Representative CDS sequence Show only first row Show all	>Lus10018483 pacid=23162113 polypeptide=Lus10018483 locus=Lus10018483.g ID=Lus10018483.BGIv1.0 annot-version=v1.0 ATGAGCACGGTGACGCACTCGCTGGCGTTCAGAGTGATGCGCCTCTGCCGGCCTTCGCTGCACGTCGACACGCAGCTGCGCATCGATCCCGCCGATCTCT TGGTTGGCGAGGACATCTTCGACGATCCGATCGCCGCGACGCAGCTCCCTTCTCTACTCGACGGTCTGACTCCAAAGTCCAAGGACTCCGCCGATCTCAG CTACGGCAACAGATTTCTACTTAGCCATCCCTTCGATTCCTTCGGGCACACTGGACTTCTCGTCCTTCCTCAAGCCTTCGGGGCGATATATTTAGGGGAG ACGTTCTGTAGCTACATAAGCATCAACAACAGCTCGAACTTCGAAGTTAGGGATGTGATTATTAAGGCAGAAATCCAAACTGAGAGGCAGAGGATCTTGT TGTTAGACACTTCTAAATCGCCGGTTGAATCGATCCGTTCTACTGGCCGCTATGACTTCATTGTGGAGCATGATGTGAAGGAACTCGGAGCTCATACGTT GGTGTGCACTGCTTTGTATACTGATGGCGATGGTGAACGTAAATATCTTCCACAGTTCTTCAAGTTTATAGTCGCAAATCCTCTTTCAGTTAGGACTAAG GTGCGAGTTGTCAAGGAAAATACATATCTAGAGGCATGCATTGAGAACCACACAAAGGCAAACCTTTACATGGACCAAGTCGAGTTTGAGCCGGCTCAGC CGTGGACAGCGCAAGTATTAAAATCCAATGAACAACCAGTTGATAATGACGCTGTATCCAGGTCAATATTCAAACCGCCTGTACTGGTGAGATCCGGTGG AGGAATCCACAACTATCTCTATCACCTAACAACGGCTTCGCAAGATCCTGTACACAATAACGTTCTTGGAAAGCTTCAGATTACATGGCGAACCAATCTT GGGGAACCCGGTCGCCTACAGACACAACAGATTCTTGGAACTCCTGTCACTCCTAAGGAGATTGAGTTGCGAATTCTGGAGATTCCGTCGGTTCTCAACT TGAATCGACCATTCTCGGTACATCTCAATCTAGCTAATCAGACAGATAGAGCATTAGGGCCATTTGAAGTCTGGCTTTCGCAAAGTAGCCCATTAGGCGA GAAAGCAGTCATGATCAATGGCCTACACACAATGGAGTTACCCAAGTTAGAGGCATCTGCGACCACTGATTTCCACTTGAATCTCATCGCTACCAAGCTC GGAGTCCAGAGAATAACGGGCATCACAGTGTTGAACACAGCGGACAAGACAGTTTACGATCCTCTACCCGATTTCGAGGCAAGTTCCGACATCTCACTAG AATGTGTCTTGTCGCGTCTTGTTAATATTCTTCCAGTAAATAATCGGCTAACAACCAAGGATCGTCTCACTGCACTGTTTTTTACTGCAGATTTTCGTGG ATGTGGATTGATTCGTACACCAGGTTCGATATTCTCATAG
AA sequence Show only first row Show all	>Lus10018483 pacid=23162113 polypeptide=Lus10018483 locus=Lus10018483.g ID=Lus10018483.BGIv1.0 annot-version=v1.0 MSTVTHSLAFRVMRLCRPSLHVDTQLRIDPADLLVGEDIFDDPIAATQLPSLLDGLTPKSKDSADLSYGNRFLLSHPFDSFGHTGLLVLPQAFGAIYLGE TFCSYISINNSSNFEVRDVIIKAEIQTERQRILLLDTSKSPVESIRSTGRYDFIVEHDVKELGAHTLVCTALYTDGDGERKYLPQFFKFIVANPLSVRTK VRVVKENTYLEACIENHTKANLYMDQVEFEPAQPWTAQVLKSNEQPVDNDAVSRSIFKPPVLVRSGGGIHNYLYHLTTASQDPVHNNVLGKLQITWRTNL GEPGRLQTQQILGTPVTPKEIELRILEIPSVLNLNRPFSVHLNLANQTDRALGPFEVWLSQSSPLGEKAVMINGLHTMELPKLEASATTDFHLNLIATKL GVQRITGITVLNTADKTVYDPLPDFEASSDISLECVLSRLVNILPVNNRLTTKDRLTALFFTADFRGCGLIRTPGSIFS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47960			unknown protein		Lus10018483 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	4.0	0.8594
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	9.4	0.8684
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	19.5	0.8126
AT1G75590			SAUR-like auxin-responsive pro...		Lus10024322 [exp]	19.6	0.8318
AT1G45207			Remorin family protein (.2)		Lus10010227 [exp]	19.6	0.7889
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10017681 [exp]	19.8	0.8093
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	20.4	0.8094
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	23.3	0.8387
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	23.4	0.8399
AT5G66440			unknown protein		Lus10041775 [exp]	29.7	0.8335

Compare expression of checked genes

Lus10018483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.