Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27450 283 / 4e-96 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 266 / 1e-89 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT5G43830 207 / 1e-66 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G22850 193 / 5e-61 Aluminium induced protein with YGL and LRDR motifs (.1) AT5G19140 181 / 1e-56 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT5G65010 46 / 2e-05 ASN2 asparagine synthetase 2 (.1.2) AT5G10240 45 / 4e-05 ASN3 asparagine synthetase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011191 [exp] 464 / 2e-167 AT4G27450 303 / 2e-104 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 245 / 3e-81 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034883 [exp] 241 / 1e-79 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10006624 [exp] 209 / 3e-67 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10039382 [exp] 207 / 2e-66 AT5G43830 372 / 6e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10041181 [exp] 203 / 8e-65 AT5G43830 369 / 1e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034038 [exp] 176 / 2e-54 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10010505 [exp] 171 / 1e-52 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10021899 [exp] 86 / 1e-18 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G049900 [exp] 325 / 5e-113 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 322 / 1e-111 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 288 / 3e-98 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 288 / 5e-98 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G158400 [exp] 201 / 4e-64 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.010G081600 [exp] 198 / 7e-63 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G203400 [exp] 172 / 8e-53 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10018484 pacid=23162200 polypeptide=Lus10018484 locus=Lus10018484.g ID=Lus10018484.BGIv1.0 annot-version=v1.0 ATGTTGGCAATCTTCAAGAAAGGAGTGGTGAATCCTCCGCATGAGCTCAACAGTCCAGCTAATTCTCCCTACAATTCTTCCTCCAACCACCAGCAGCAGC AGCAGCTTCCTCACCAGATCGTCAACAGCTTCATTGCCGCCAATCCCAACGACTCCCTGTCGATCAAATTCCGCGACGACGCCCTCCTCGCCTACGTCCC CCGCCGCAACTCCCTCACCGCCCCCCAAAGGTTGTTCTGCGGAGTGAACGACGTGTACTGCATCTTCAACGGGAACTTGAACAATCTGTGCAGCTTGAAC AGGCAGTACGGCCTCGCCAAGGGGAGCAACGAGGCTCTGTTCGTGATTCAGGCGTACCTCACTCTCCGTGACCGTGGGCCTTACCCTGCTCACAAGGTCC TCAAGGATCTGGAAGGCCCATTCGGGTTCGTCATCTACGACTCCAAGTCGGGTCGGGTCTTCGCCGCCCGGGGCTCGGCAGCTGAAGGAGGAGTGGGGCT ATACTGGGGGATAGCGAGGGATGGTTCGGTGGTAATTACTGACAACTTGGAGGGGATAAAGGGAAGCTGCGGGAAATCGTTTGCTCAGTTCCCGGCTGGG TGTATGTATGAGAGCCAAGACGAAGGGCTGACGAGCTTCGAGCATCCGTGTAGCGAGCTCAGGGCGATGCCGAGGATCGACAGCGAAGGAGTTATGTGTG GGGCTGATTTCAAGGTCGATGTTCAGGCTAGGGTCAGTGGCGGAGGTGGGATGCCGCGTGTTGGGAGTGAAGTTAACTGGGCTTTGGGTGGTTCTTCACA AGCTTGA
AA sequence Show only first row Show all	>Lus10018484 pacid=23162200 polypeptide=Lus10018484 locus=Lus10018484.g ID=Lus10018484.BGIv1.0 annot-version=v1.0 MLAIFKKGVVNPPHELNSPANSPYNSSSNHQQQQQLPHQIVNSFIAANPNDSLSIKFRDDALLAYVPRRNSLTAPQRLFCGVNDVYCIFNGNLNNLCSLN RQYGLAKGSNEALFVIQAYLTLRDRGPYPAHKVLKDLEGPFGFVIYDSKSGRVFAARGSAAEGGVGLYWGIARDGSVVITDNLEGIKGSCGKSFAQFPAG CMYESQDEGLTSFEHPCSELRAMPRIDSEGVMCGADFKVDVQARVSGGGGMPRVGSEVNWALGGSSQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	0	1
					Lus10010883 [exp]	1.7	0.9252
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	2.0	0.9581
AT3G53630			unknown protein		Lus10024421 [exp]	2.4	0.9254
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	2.4	0.9170
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	2.8	0.9229
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Lus10018756 [exp]	5.8	0.9013
					Lus10011136 [exp]	6.5	0.9061
AT5G63460			SAP domain-containing protein ...		Lus10022457 [exp]	7.5	0.9001
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	9.4	0.9076
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	9.5	0.8704

Compare expression of checked genes

Lus10018484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.