Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04930 588 / 0 DES-1-LIKE fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011189 [exp] 691 / 0 AT4G04930 585 / 0.0 fatty acid desaturase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050800 [exp] 599 / 0 AT4G04930 573 / 0.0 fatty acid desaturase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF08557 [flax] [poplar] Lipid_DES Sphingolipid Delta4-desaturase (DES)
Representative CDS sequence Show only first row Show all	>Lus10018485 pacid=23162089 polypeptide=Lus10018485 locus=Lus10018485.g ID=Lus10018485.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGTGGGGAGAGGATGTCGGCAATGGAGAAGAAAGAGGAAGAAGAAGGAGTAATGGCGACGGATTTCTTCTGGTCTTACACCGACGAGCCTC ACGCTTCTCGCAGGAAGCAGATCCTCTCTCGTTACCCTCAGATTAAGCAGCTCTTCGGCCCCGACCCCTGGGCTTTCCCCAAGATCACAGTGGTGGTAAT GCTGCAACTATATACAGCAACATTGCTCCACGACTCATCCTGGCTAAAGATGCTAGCAATAGCCTACTTCTTCGGCTCGTTCCTCAACCACAACCTCTTC CTCGCCATCCACGAGCTAAGCCACAACCTTGCATTCTCTTCCCCGTTCCACAACCGCTGCCTCGGAATCTTCGCCAACCTCCCCATCGGAGTCCCCATGT CGGTAACGTTCCAAAAGTACCACCTCGAGCACCACCGCTTCCAAGGAGTCGACGGCATCGACATGGACATCCCATCCCAAACCGAAGCCCACTTAGTGAC CAACATTGCCTCGAAGTCCATATGGGTCCTCCTCCAGCTCTTCTTCTACGCCCTCCGCCCGCTCTTCCTCAAACCGAAACCCCCCGGTTACTGGGAGTTC GTCAACTTCTCGGTTCAAATCCTCCTCGACTCAGCCATGGTCTACTTCTTCGGATGGAAATCATTCGCCTACTTAATCATGTCAACTTTCGTCGGGGGCG GGATGCACCCCATGGCCGGCCATTTCATCTCCGAGCATTATGTGTTCAACCCCGAACAGGAGACGTACTCGTACTACGGGCCCCTCAATCTGCTGACGTG GCACGTGGGGTACCACAATGAACACCATGACTTCCCCAGGATCCCTGGGAGCAAGCTTCACAAGGTGAAGGAGATTGCGCCCGAGTACTATGAGAGCTTG GAGTCTTACCAGTCCTGGAGCCAGGTTATATACATGTACGTTATGGACCGGACGATCGGACCGTTTAGCCGGATGAAGAGGAAAGTTGGTTCGAGTGCTG TAAAGAAATCAGAGTAA
AA sequence Show only first row Show all	>Lus10018485 pacid=23162089 polypeptide=Lus10018485 locus=Lus10018485.g ID=Lus10018485.BGIv1.0 annot-version=v1.0 MGKGGERMSAMEKKEEEEGVMATDFFWSYTDEPHASRRKQILSRYPQIKQLFGPDPWAFPKITVVVMLQLYTATLLHDSSWLKMLAIAYFFGSFLNHNLF LAIHELSHNLAFSSPFHNRCLGIFANLPIGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSQTEAHLVTNIASKSIWVLLQLFFYALRPLFLKPKPPGYWEF VNFSVQILLDSAMVYFFGWKSFAYLIMSTFVGGGMHPMAGHFISEHYVFNPEQETYSYYGPLNLLTWHVGYHNEHHDFPRIPGSKLHKVKEIAPEYYESL ESYQSWSQVIYMYVMDRTIGPFSRMKRKVGSSAVKKSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	0	1
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	2.0	0.8917
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	4.5	0.8595
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	5.1	0.8944
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	9.4	0.8126
AT3G63430			unknown protein		Lus10018750 [exp]	9.6	0.8667
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	10.5	0.8287
AT2G03640			Nuclear transport factor 2 (NT...		Lus10026668 [exp]	14.0	0.7697
AT3G54250			GHMP kinase family protein (.1...		Lus10043438 [exp]	18.3	0.8221
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	20.0	0.8162
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	20.0	0.8126

Compare expression of checked genes

Lus10018485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.