Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04950 280 / 5e-93 AtGRXS17 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) AT3G54900 107 / 4e-29 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting protein 1 (.1) AT3G15660 104 / 4e-28 ATGRX4 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) AT2G38270 103 / 2e-26 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting protein 2 (.1) AT2G20270 47 / 2e-06 Thioredoxin superfamily protein (.1.2) AT5G40370 41 / 5e-05 GRXC2 glutaredoxin C2, Glutaredoxin family protein (.1.2) AT4G15680 39 / 0.0003 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011187 [exp] 332 / 2e-117 AT4G04950 322 / 8e-110 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10011188 [exp] 99 / 1e-25 AT4G04950 297 / 1e-99 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Lus10012592 [exp] 98 / 5e-25 AT3G54900 156 / 2e-48 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10041501 [exp] 98 / 5e-25 AT3G54900 159 / 4e-49 GLUTAREDOXIN, CAX interacting protein 1 (.1) Lus10002847 [exp] 94 / 5e-23 AT2G38270 384 / 4e-135 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Lus10008687 [exp] 89 / 2e-20 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Lus10042104 [exp] 47 / 1e-06 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10001237 [exp] 46 / 1e-06 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10022844 [exp] 44 / 3e-05 AT4G28730 177 / 3e-57 glutaredoxin C5, Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042200 [exp] 304 / 3e-102 AT4G04950 750 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.011G051400 [exp] 300 / 2e-100 AT4G04950 680 / 0.0 Arabidopsis thaliana monothiol glutaredoxin 17, thioredoxin family protein (.1) Potri.014G141200 [exp] 108 / 1e-29 AT3G54900 197 / 5e-65 GLUTAREDOXIN, CAX interacting protein 1 (.1) Potri.003G060600 [exp] 100 / 1e-26 AT3G15660 201 / 7e-67 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2) Potri.016G119200 [exp] 98 / 2e-24 AT2G38270 393 / 2e-138 GLUTAREDOXIN, CAX-interacting protein 2 (.1) Potri.012G082800 [exp] 48 / 4e-07 AT5G63030 155 / 6e-50 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.015G078900 [exp] 45 / 3e-06 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.001G347700 [exp] 44 / 7e-06 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2) Potri.002G254100 [exp] 40 / 0.0003 AT4G28730 176 / 2e-56 glutaredoxin C5, Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10018487 pacid=23162121 polypeptide=Lus10018487 locus=Lus10018487.g ID=Lus10018487.BGIv1.0 annot-version=v1.0 ATGCTCTTCATGAAGGGAAATGCCGAGGCTCCCCAGTGCGGGTTCAGCAAGAAAGTCGTCAACATACTGAAAGAAGAGAACGTCAAGTTCGGAACTTTCG ACATCCTATCCGACAATGAGGTTCGCGAAGGATTGAAGAAATTCTCCAACTGGCCTACCTATCCACAGCTCTACTTCCAAGGCGAGTTTCTTGGGGGATG CGATATCGCAGTCTCGATGCACGAGAGTGGCGAATTGAAAGAGGCATTTGCAGACACAAATCTCGAGATGCAGAAAAGCGGTGAACTTCAGAAGGTCTTG GCCGAGAAAGGGGTAGTCATAGTCAAGAAACAAACTCTCGAAGATCGGTTGAAGGGTCTGGTTTCCTCTTCCCCCGTGATGCTGTTCATGAAAGGTAACC CGGACGCTCCTCGATGTGGCTTCAGTTCGAAAGTTGTGAGTGCCTTGAAGGAAGAAGGCGTATTGTTCGGATCGTTCGATATCTTGAGCGACGAGGAAGT GAGGCAGGGTCTGAAGGTGTTCTCGAATTGGCCGACTTTTCCTCAGCTGTATTACAAGGGGCAGCTTGTAGGAGGATGTGACATTATCCTGGAACTCCGA AGCAATGGGGAATTGAAGTCCACCTTGTCTGAATAA
AA sequence Show only first row Show all	>Lus10018487 pacid=23162121 polypeptide=Lus10018487 locus=Lus10018487.g ID=Lus10018487.BGIv1.0 annot-version=v1.0 MLFMKGNAEAPQCGFSKKVVNILKEENVKFGTFDILSDNEVREGLKKFSNWPTYPQLYFQGEFLGGCDIAVSMHESGELKEAFADTNLEMQKSGELQKVL AEKGVVIVKKQTLEDRLKGLVSSSPVMLFMKGNPDAPRCGFSSKVVSALKEEGVLFGSFDILSDEEVRQGLKVFSNWPTFPQLYYKGQLVGGCDIILELR SNGELKSTLSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018487 [exp]	0	1
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	3.2	0.9236
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	3.7	0.9254
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	7.3	0.9179
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	9.2	0.9140
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10022770 [exp]	9.8	0.8744
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	10.8	0.9000
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	14.7	0.9007
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	14.8	0.9117
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	15.0	0.8938
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	15.9	0.8960

Compare expression of checked genes

Lus10018487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.