Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36990 136 / 2e-39 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT5G62020 130 / 6e-37 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT2G41690 128 / 1e-36 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT4G11660 130 / 4e-36 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT1G46264 125 / 1e-34 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT1G32330 127 / 2e-34 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 124 / 3e-33 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G63350 119 / 6e-33 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT3G51910 117 / 2e-32 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT3G22830 119 / 9e-32 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011185 [exp] 350 / 1e-124 AT5G62020 143 / 7e-42 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10008007 [exp] 139 / 1e-39 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 139 / 2e-39 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10014994 [exp] 133 / 6e-38 AT5G62020 259 / 2e-85 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10000312 [exp] 131 / 5e-36 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 129 / 4e-35 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10019348 [exp] 123 / 2e-34 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10013797 [exp] 122 / 1e-33 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10001133 [exp] 123 / 3e-33 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042600 [exp] 219 / 7e-73 AT1G32330 132 / 2e-36 heat shock transcription factor A1D (.1) Potri.011G051600 [exp] 219 / 8e-73 AT5G16820 119 / 3e-31 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.012G138900 [exp] 142 / 9e-42 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.016G056500 [exp] 136 / 3e-40 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.015G141100 [exp] 135 / 5e-39 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.007G043800 [exp] 134 / 1e-38 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.001G273700 [exp] 129 / 6e-37 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G108100 [exp] 130 / 1e-36 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.009G068000 [exp] 125 / 2e-35 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.002G124800 [exp] 125 / 2e-34 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10018488 pacid=23162151 polypeptide=Lus10018488 locus=Lus10018488.g ID=Lus10018488.BGIv1.0 annot-version=v1.0 ATGAACACGGTTAGCGGTTATCCAGCGGCGATGGACGTCAATCAAGCGGCGGCGGCAACGGCGACCACAGGCCGTGGGTCGGTGAGAGCTCCGGCGCCGT TTCTGTCGAAGACGTACGATTTTCTGGAAGAGAGACCGGAAGAAAGGATTATATCGTGGAATGAAGACGGGACGGGGTTCGTTGTGTGGTCGCCGGCGGA GTTTTCCGAGCTGATGTTGCCTAGATACTTCAAGCATAATAATTTCTCCAGCTTTATCCGCCAGCTTAACACATACGGTTTCAAGAAGGTATCGTCGAAG AGATGGGAGTTCAAGCACGGCAAGTTCCGGAGGGGAAACCGAGACATGCTAGTCGAAATAACTCGAAAGAGGTGCGAGGCGAGCTCGTTCCCAGCGTACT TGAAGGCAGCTAATTCGAACGACGAGACTTCCGATAACGATCACCACAAACGGAACATACGACTCATGATGATGGAAGAGAATTCGAATCTGAGGAAGGA GAAGTTGGAGCTCCAAACCCAAATTGCTGAGTTCAGAGACCTTAAGCTGAAGCTGTTGGATTTTGTTGGTTTTGTTGGTCAGTACGTGCAGAAAGATCTT TAA
AA sequence Show only first row Show all	>Lus10018488 pacid=23162151 polypeptide=Lus10018488 locus=Lus10018488.g ID=Lus10018488.BGIv1.0 annot-version=v1.0 MNTVSGYPAAMDVNQAAAATATTGRGSVRAPAPFLSKTYDFLEERPEERIISWNEDGTGFVVWSPAEFSELMLPRYFKHNNFSSFIRQLNTYGFKKVSSK RWEFKHGKFRRGNRDMLVEITRKRCEASSFPAYLKAANSNDETSDNDHHKRNIRLMMMEENSNLRKEKLELQTQIAEFRDLKLKLLDFVGFVGQYVQKDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	1.4	0.8943
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	3.5	0.9036
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	4.4	0.8374
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	4.6	0.8687
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	5.1	0.8496
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	6.0	0.8748
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	7.5	0.8774
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	9.5	0.8745
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	12.2	0.8701
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	13.0	0.8305

Compare expression of checked genes

Lus10018488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.