Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03510 134 / 3e-38 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 133 / 3e-38 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 108 / 4e-29 ATRMA2 RING membrane-anchor 2 (.1) AT1G74990 103 / 7e-28 RING/U-box superfamily protein (.1) AT1G19310 105 / 1e-27 RING/U-box superfamily protein (.1) AT2G23780 100 / 8e-26 RING/U-box superfamily protein (.1) AT3G58030 101 / 1e-24 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 99 / 6e-24 RING/U-box superfamily protein (.1) AT2G44410 80 / 5e-17 RING/U-box superfamily protein (.1) AT2G26350 54 / 2e-08 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011184 [exp] 387 / 5e-138 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10010791 [exp] 109 / 5e-29 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 107 / 3e-28 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10033697 [exp] 105 / 1e-27 AT4G03510 149 / 1e-44 RING membrane-anchor 1 (.1.2) Lus10004162 [exp] 106 / 2e-26 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 106 / 2e-26 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10018589 [exp] 102 / 3e-26 AT4G03510 154 / 9e-47 RING membrane-anchor 1 (.1.2) Lus10016255 [exp] 102 / 7e-25 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 102 / 9e-25 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051800 [exp] 216 / 1e-70 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1) Potri.004G042700 [exp] 211 / 2e-68 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.013G132300 [exp] 157 / 3e-47 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2) Potri.019G100800 [exp] 152 / 3e-45 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.001G401600 [exp] 149 / 6e-44 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.011G120800 [exp] 140 / 1e-40 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.007G031600 [exp] 108 / 8e-29 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 108 / 1e-28 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 105 / 1e-27 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 102 / 3e-26 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10018489 pacid=23162134 polypeptide=Lus10018489 locus=Lus10018489.g ID=Lus10018489.BGIv1.0 annot-version=v1.0 ATGGCTTTCGAGCAATACTACGCGCAGGAATGGAAATCAGTTGCAAGTGCAGCAGCAGCAACAGCGCCACAAACAACTCCCACCGACTGCTTCGACTGCA ACATATGCTTCGACTTTGCTCGAGAACCAGTAGTCACCCTCTGCGGCCATCTATACTGCTGGCCCTGCATCTACAAATGGCTCCACGTCCAAACCGAGCA CCCTCAGTGCCCTGTTTGCAAAGCTGACATATCTCACACCACCATGGTCCCTCTCTACGGCAGAGGAGGACAATCCTCCTCCGAAGAAGAACCAAACCTC GAAACCAAGCCGCCCTCAACCGGCATCAATGGCATTCTCATCCCTCCTAGACCTCCTGCCTATGGCTGCACTCAAGCTCTCACGTCTGTCAGCAACCCCC AGCTTCCATACCACAACCACCACCACCACCATAGTCCAATGGCATTCGACAATGGACCTTCTTCTTCGTTGTCGTCCTCACCATTGGTGAACCTCAGAGG AGTAGGCTCTCCATCGACTGGGTTCCACCACCCTGCTTTCGGGGTGTTTGGCGAGTTAGTCTACGCAAGGGTGTTTGGGAACTCAGATAGTCTGTACACG TACCCTAACTCGTACCAGTTTGTGACGAGTAGTACTTCGAGGTTGAGGAGGCATGAGATGCAGGCGGAGAAGTCGTTGAATAGAATCTCTATCTTCCTCT TCTGTTGCTTCCTCCTATGCCTGATCGTGTTCTGA
AA sequence Show only first row Show all	>Lus10018489 pacid=23162134 polypeptide=Lus10018489 locus=Lus10018489.g ID=Lus10018489.BGIv1.0 annot-version=v1.0 MAFEQYYAQEWKSVASAAAATAPQTTPTDCFDCNICFDFAREPVVTLCGHLYCWPCIYKWLHVQTEHPQCPVCKADISHTTMVPLYGRGGQSSSEEEPNL ETKPPSTGINGILIPPRPPAYGCTQALTSVSNPQLPYHNHHHHHSPMAFDNGPSSSLSSSPLVNLRGVGSPSTGFHHPAFGVFGELVYARVFGNSDSLYT YPNSYQFVTSSTSRLRRHEMQAEKSLNRISIFLFCCFLLCLIVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	2.4	0.8454
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	2.8	0.8683
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040286 [exp]	6.3	0.8051
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	6.5	0.7985
AT1G19310			RING/U-box superfamily protein...		Lus10010791 [exp]	7.2	0.7777
					Lus10008223 [exp]	7.5	0.8059
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	8.9	0.8020
AT1G71140			MATE efflux family protein (.1...		Lus10041053 [exp]	14.4	0.7895
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	16.7	0.7393
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	22.3	0.7680

Compare expression of checked genes

Lus10018489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.