Plant FIBer expression Database

Lus10018490 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33793 207 / 5e-68 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011183
[exp]
319 / 8e-112 AT2G33793 224 / 2e-74 unknown protein
Lus10008547
[exp]
40 / 0.0006 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G051900
[exp]
241 / 2e-81 AT2G33793 264 / 2e-90 unknown protein
Potri.004G042800
[exp]
220 / 4e-73 AT2G33793 254 / 1e-86 unknown protein
PFAM info
Representative CDS sequence
>Lus10018490 pacid=23162094 polypeptide=Lus10018490 locus=Lus10018490.g ID=Lus10018490.BGIv1.0 annot-version=v1.0
ATGTCAGGAAGGAAAGCAAGCTCGAGGAAGCGAGCCGCCGATGCCGCTGCCGCCGTGAAGTCGGCTCCGCCATCGTCCAAGCTCCGCCTCGACGAGGATT
TCGATCCCGATATGTCAAGCGATCTCAAGGGGATCATGTCGGCGCTGCACCAGATTAGAGCGAAGACAGAGAAAGACGGCCAGAAGATGAAGGAGGAGAC
CGTTTCCAGTGTTGCTTCGGAGATTAGGTGTATGCTGAATGAATTGAAGACGAAGGTTGAGAAGGATAGGCAAACCTTTGGTAAGGCGCTCCAGAAGAAC
TCAAAAGAGTGCGAGAATTACCTTAAGAGCGAGTCTGCAAAGATTCAGGAGATGTACGAGAGATTTTCCAAGGAGAAATCAGCTCATACGCAGTCCATGC
AAGAAACCATAACCAAATTCGAGGATGACAAGGAGAGACTGCTGATGCGATATGAACAACTGAAGAAGAAAGAGAAGAACATGGTTGCTGAGTGTGAGAA
AGCTTGCGAGGAAAAAATCTCTAAACTGGAGGAATCCCTCAAGAAGAAAAAGCAGGACGGCAAGACTTTCAGCATACTGAGGAAAACGCTAGGCAGTTTC
TTGGACAACAACACCTCCGATGACGAATTCCCAGCAGACGATTGA
AA sequence
>Lus10018490 pacid=23162094 polypeptide=Lus10018490 locus=Lus10018490.g ID=Lus10018490.BGIv1.0 annot-version=v1.0
MSGRKASSRKRAADAAAAVKSAPPSSKLRLDEDFDPDMSSDLKGIMSALHQIRAKTEKDGQKMKEETVSSVASEIRCMLNELKTKVEKDRQTFGKALQKN
SKECENYLKSESAKIQEMYERFSKEKSAHTQSMQETITKFEDDKERLLMRYEQLKKKEKNMVAECEKACEEKISKLEESLKKKKQDGKTFSILRKTLGSF
LDNNTSDDEFPADD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G33793 unknown protein Lus10018490
[exp]
0 1
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Lus10042070
[exp]
6.2 0.7478
AT1G03270 CBS domain-containing protein ... Lus10028010
[exp]
15.2 0.6524
AT1G01580 FRD1, ATFRO2, F... FERRIC CHELATE REDUCTASE DEFEC... Lus10027507
[exp]
18.8 0.7129
AT2G46980 unknown protein Lus10009259
[exp]
19.0 0.7326
AT5G03680 Trihelix PTL PETAL LOSS, Duplicated homeodo... Lus10035570
[exp]
20.1 0.7110
AT5G41620 unknown protein Lus10028746
[exp]
20.6 0.6871
AT3G11090 AS2 LBD21 LOB domain-containing protein ... Lus10028986
[exp]
21.9 0.7101
AT5G61980 AGD1 ARF-GAP domain 1 (.1) Lus10016724
[exp]
25.7 0.7030
Lus10001494
[exp]
33.0 0.6794
Lus10000458
[exp]
35.5 0.6586

Lus10018490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.