Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15210 696 / 0 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 683 / 0 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G00490 439 / 6e-149 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT3G23920 434 / 3e-146 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 426 / 2e-143 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT2G45880 394 / 3e-129 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G55700 336 / 8e-109 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G45300 340 / 9e-109 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 229 / 9e-68 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039701 [exp] 1056 / 0 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 838 / 0 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 438 / 2e-148 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 431 / 2e-145 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 428 / 4e-144 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10037846 [exp] 419 / 4e-141 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10023700 [exp] 417 / 6e-140 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10003005 [exp] 396 / 2e-132 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10030392 [exp] 396 / 7e-132 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G040800 [exp] 772 / 0 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 447 / 5e-152 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.001G148900 [exp] 439 / 7e-149 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 427 / 2e-143 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G085500 [exp] 425 / 3e-143 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.002G159300 [exp] 426 / 1e-141 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.008G174100 [exp] 416 / 2e-139 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083700 [exp] 418 / 6e-139 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 362 / 3e-117 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.003G143500 [exp] 332 / 2e-106 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10018491 pacid=23180495 polypeptide=Lus10018491 locus=Lus10018491.g ID=Lus10018491.BGIv1.0 annot-version=v1.0 ATGACGACGGTGATGCAATGTAATAACAACCACCACCGTCAGAGCCAGTTTCCACCAGCAGCGGCGAAACGTGGGACTGGTTGGCTGAGTCAAGAGAAGG CTAGTGATCGTGGGTTCAGGCAACGTCGTCGTCGGATGAACGGTGTAAATTATTCGAGTGGTGGTGGAGCGGATCAGGTTGTGTTAACGCGGGAGATTAC TTCCACTGCGGAAGTAGCAGAGTTGGGAGTAGTGACGCCGGACAATGTCTTCGAGAACAAGGACGTCGTGGAGAAGCAACTGAAGGAGCTGAAATCGGCA GGGATTGATGGGATCATGATCGACGTATGGTGGGGGATCATCGAAGCCAAAGGGCCGAAACAGTACGACTGGAGTGGCTACAAGGAGCTTTTCGAGCTAC TGAAAGCACTGGACTTAAAAATCCAAGCTATAATGTCATTTCACCAATGTGGAGGCAATGTTGGTGACAATGTCTTCATCCCTCTCCCTGATTGGGTCCT CGAAGTCGGGGAGGTTGACCCCGATGTCTTTTACACCAACAGGGCCGGTGTTCGGAACAAGGAGTATCTGTCTCTTGGTGTTGACCGCCTCCCTCTTTTC GGCGGCCGCTCTCCTGTTCAGATCTACGGAGACTACATGAAGAGTTTCAGGGAGACCATGGCGGATTTCTTCGATTCGGGACTGATAATTGACATCGAAG TAGGGCTTGGACCGGCTGGGGAGCTTAGATACCCATCTTATCCTGAGACTCAAGGATGGGTTTTCCCTGGAATTGGAGAGTTTCAGTGCTATGACAAGTA CCTGGCAGCTGAGTTCAAAAAGGAAGCAATAGAGGCAGGGCATCCTGAGTGGGAATTGCCTGATGATGCAGGAGAATACAATAATACCCCTGATCAAACA GGGTTCTTTAAATCCAACGGCTCATATCTTTCTGAAAAGGGCAAGTTTTTCCTGATGTGGTACTCCAACAAGTTGATTATCCATGGAGATGACATCCTTG ATGAGGCCAACAAGGCCTTTTTGGGATGCAAGGTCAAATTGGCTGCCAAGGTCTCGGGAATCCATTGGTGGTACACGGATCCGAGCCACGCAGCGGAGCT GACTGCAGGGTACTACAACTTGAAGGAACGAGACGGGTACCGACCGGTGGCGAGGATGATGTCGAGACACCATGGGCTTGTGAACTTCACTTGCTTGGAA ATGAGGAACACTGAGCAGCCCGCCGCGGCCAAGAGTGCTCCCCAACAGCTTGTCCAACAGGTTTTGAGTGACGCGTGGACGGAAGGGATCGATGTGGCGG GAGAGAACGCGTTGGCAAGGTACGACGCCGAAGGATACAACCAGATTCTCCTGAACGCCAGACCTAACGGAGTCCGCCCACCAAAGGACGGGGAGAAGAA GTTACAGATGTACGGAGTCACGATCCTTCGACTGACGGATGATCTGTTGGAACAGAAGAACTTGGACGTGTTCAAGAAGTTCGTAAGGAGGATGCATGCC AACCAGGACTATTGTGGAGATTCGAGCAAGTATGGGCACGAAATCGGAGTTTTGGAGAGATCTAAGGGAAAATTGGGGATTGAAGAGCTTATGGAGGCAA CTAAGCCAATAGAGCCGTTTCCATGGGATGAAGAAACTGATATGCCTGTTGAGCCTGTAGGTTTATTTGGCAAACTCCTTCAGAAATTATTTTCTCTATT TTTCAGATGA
AA sequence Show only first row Show all	>Lus10018491 pacid=23180495 polypeptide=Lus10018491 locus=Lus10018491.g ID=Lus10018491.BGIv1.0 annot-version=v1.0 MTTVMQCNNNHHRQSQFPPAAAKRGTGWLSQEKASDRGFRQRRRRMNGVNYSSGGGADQVVLTREITSTAEVAELGVVTPDNVFENKDVVEKQLKELKSA GIDGIMIDVWWGIIEAKGPKQYDWSGYKELFELLKALDLKIQAIMSFHQCGGNVGDNVFIPLPDWVLEVGEVDPDVFYTNRAGVRNKEYLSLGVDRLPLF GGRSPVQIYGDYMKSFRETMADFFDSGLIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLAAEFKKEAIEAGHPEWELPDDAGEYNNTPDQT GFFKSNGSYLSEKGKFFLMWYSNKLIIHGDDILDEANKAFLGCKVKLAAKVSGIHWWYTDPSHAAELTAGYYNLKERDGYRPVARMMSRHHGLVNFTCLE MRNTEQPAAAKSAPQQLVQQVLSDAWTEGIDVAGENALARYDAEGYNQILLNARPNGVRPPKDGEKKLQMYGVTILRLTDDLLEQKNLDVFKKFVRRMHA NQDYCGDSSKYGHEIGVLERSKGKLGIEELMEATKPIEPFPWDEETDMPVEPVGLFGKLLQKLFSLFFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	0	1
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	2.0	0.8735
AT4G13150			unknown protein		Lus10038175 [exp]	2.4	0.8754
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	2.4	0.8791
AT1G52190			Major facilitator superfamily ...		Lus10038618 [exp]	3.7	0.8589
AT2G36885			unknown protein		Lus10013829 [exp]	6.3	0.8539
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	6.3	0.8698
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	6.7	0.8737
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	7.1	0.8439
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	8.1	0.8343
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10027515 [exp]	9.0	0.8458

Compare expression of checked genes

Lus10018491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.