Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 376 / 3e-120 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 359 / 2e-115 MEF22 mitochondrial editing factor 22 (.1) AT3G05240 347 / 1e-112 MEF19 mitochondrial editing factor 19 (.1) AT2G03380 349 / 9e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 345 / 1e-108 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71490 341 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 341 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 340 / 4e-108 SLO1 SLOW GROWTH 1 (.1) AT1G08070 339 / 2e-107 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 335 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039703 [exp] 1030 / 0 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 376 / 5e-123 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 375 / 5e-120 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 358 / 1e-115 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 357 / 2e-114 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 357 / 4e-114 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 355 / 8e-114 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 360 / 3e-113 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008136 [exp] 351 / 4e-113 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161800 [exp] 388 / 3e-126 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 376 / 1e-120 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 376 / 6e-120 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G111900 [exp] 370 / 3e-119 AT4G33990 518 / 1e-173 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G245200 [exp] 363 / 5e-118 AT3G25060 683 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 363 / 4e-117 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 362 / 2e-116 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 356 / 9e-115 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 355 / 2e-114 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G217900 [exp] 354 / 1e-113 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018492 pacid=23180409 polypeptide=Lus10018492 locus=Lus10018492.g ID=Lus10018492.BGIv1.0 annot-version=v1.0 ATGAATGGCAAGCTCACGATCAACAATGCCAAATTCCAGCGACCAATACTATTCCTCTGGAAATCTGGATTCAGTTCCATCGCACATCCTTCTATCCGAT TCCCTCTTCCGTCGCTGCAATGCGGATCCATCTTACAATCGCTCACGAACTCCAAATCTCTCATGGAAGGCCGTAAGCTCCACGCCCACGTAACAACCAA CGGCGGTCTCATTCACAACACTTACTTGAGCACCAAACTATCCGCTTTCTACGCAAGAGGCGGAGACATGGATACTGCCCAGGTGATCTTCGACGGAATC CAATCCAAAAGCTCGTTCCTTTGGAACTTCATGATTAGAGGGTACGCCAGCAGCGGGATTTCTAGGAAAGCTCTGGATTTGTACAGAGAGATGTTGAGGT TTGGGTTGAAAGCCGATAATTTCACTTTTCCATTTGTTGTCAAAGCTTGTGGCGATTTGTTGGATGTAAGGATTGGAAGGAGAGTTCATGGGGAGGTTGT TGTTTGTGGGTTTGAATCGGATGTGTACGTTGGAAACTCTCTCATAGCAATGTACTCAAAGTGTGGGGGTATGGGAGTTGCACGGAAGGTGTTTGATCAA ATGCATGTGAGAGATTTGACTTCTTGGAACTCAATGATATCAGGTTATGTGAAGAATTCCATGGCAGGGGAAGCTTTGAGAACGTTCCGGACGATGAATG AAGTTGGAGTTTCATTGGATGGCACTACTTTGCTCGGTAGCCTCTCCTCCTGTGCTGAATTGTTGATGCTGAAGCAAGTTAAAGAAGTTCATGGCTATGT TGTAAGAAAAAGTCATTCACTTTACAACACCTTTCTGGAGAATTCACTAATTGAAGTCTACTGCAAGTGTAGTTCAATGGATTATGCCAAAAAATTGTTT GAGACAATGGCTAGGAATAAAGATACAGTGTCATGGAACTCTTTGATTGCAGGCTATGCAAGAAGAGAAGACTCATTCGAAAGCCTGAGGACTTTTAACA GAATGGTTTCGGAAGGCTTCGAGCCGGATCAGGTAACTTACGTGACTGTGCTCGGAGTATGTGAAAAGATCACATCTTTACAATTTGGGATGTCTCTCCA TGCACGTGTGATCAAGTTAGGGTTTTCTGGTGCAAGTACAATGGTGGGAACTGCACTCATAGACATGTATGCAAAATGCGGAAGTCTAGCTTGTTCGAGA TCCATTTTTGACGAAATGCGTCATGATCGGAGAAATTTGGTTTCTTGGTGTGCCATGATTTCTGGATACAGCATTCATGGGAAGGCAAGGGAGGCTATTG AGTTGTTCAATAGAATGGTGGATGATGAAACTAGTATCGAACCGGATGAAGGTGTTCTCACTTCGGTGTTATCAGCTTGTAGCCATGGTGGATTGGTAAA TGAAGGCAGAGAGATTTTCAACAGAATGCAGAAAGATTACAAAACAATGGCTCAGTACTCATGCTATGTAGATCTCCTCAGCCGATCCGGTCGGTTAACC GAAGCTCATGAGGTGATTCGAGCAATGCCTATCGATCCCTCAATTGATGTTTGGGCTGCTCTACTCAACGGTTGTCGCCTGCACAACAATCTCGAGCTAG CTGAGATCGCAGCGAGGGAGATCGTGTCCCTGAATCCTAACAATGTGAGCAGCTACATCTCCCTTGCGAACGTCTATGCAGCGGAGAAGCGATGGGGAGA TGTCGAAAGGGTAAGATCGGTGGTGAGAAGTAAAGGGCTGATGAAACCGCCAGGGTGCAGCTCTGGTGAACTGGTCCGGGAACCATTGTAA
AA sequence Show only first row Show all	>Lus10018492 pacid=23180409 polypeptide=Lus10018492 locus=Lus10018492.g ID=Lus10018492.BGIv1.0 annot-version=v1.0 MNGKLTINNAKFQRPILFLWKSGFSSIAHPSIRFPLPSLQCGSILQSLTNSKSLMEGRKLHAHVTTNGGLIHNTYLSTKLSAFYARGGDMDTAQVIFDGI QSKSSFLWNFMIRGYASSGISRKALDLYREMLRFGLKADNFTFPFVVKACGDLLDVRIGRRVHGEVVVCGFESDVYVGNSLIAMYSKCGGMGVARKVFDQ MHVRDLTSWNSMISGYVKNSMAGEALRTFRTMNEVGVSLDGTTLLGSLSSCAELLMLKQVKEVHGYVVRKSHSLYNTFLENSLIEVYCKCSSMDYAKKLF ETMARNKDTVSWNSLIAGYARREDSFESLRTFNRMVSEGFEPDQVTYVTVLGVCEKITSLQFGMSLHARVIKLGFSGASTMVGTALIDMYAKCGSLACSR SIFDEMRHDRRNLVSWCAMISGYSIHGKAREAIELFNRMVDDETSIEPDEGVLTSVLSACSHGGLVNEGREIFNRMQKDYKTMAQYSCYVDLLSRSGRLT EAHEVIRAMPIDPSIDVWAALLNGCRLHNNLELAEIAAREIVSLNPNNVSSYISLANVYAAEKRWGDVERVRSVVRSKGLMKPPGCSSGELVREPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10018492 [exp]	0	1
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	1.7	0.8697
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10040648 [exp]	3.2	0.8121
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	4.5	0.8344
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	7.1	0.8327
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10036373 [exp]	7.2	0.7962
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	8.0	0.7998
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	8.5	0.8270
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	11.0	0.8027
AT5G25530			DNAJ heat shock family protein...		Lus10008109 [exp]	13.8	0.7387
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	13.8	0.7972

Compare expression of checked genes

Lus10018492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.