Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77980 72 / 8e-15 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 69 / 2e-13 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 63 / 7e-12 MADS AGL67 AGAMOUS-like 67 (.1.2) AT1G71692 61 / 4e-11 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) AT2G03060 55 / 9e-09 MADS AGL30 AGAMOUS-like 30 (.1.2) AT2G45660 54 / 9e-09 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT4G11880 53 / 2e-08 MADS AGL14 AGAMOUS-like 14 (.1) AT3G30260 53 / 2e-08 MADS AGL79 AGAMOUS-like 79 (.1) AT4G24540 51 / 9e-08 MADS AGL24 AGAMOUS-like 24 (.1) AT2G24840 51 / 9e-08 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039704 [exp] 304 / 7e-106 AT1G77980 89 / 7e-21 AGAMOUS-like 66 (.1) Lus10022506 [exp] 72 / 2e-14 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 69 / 2e-13 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10034464 [exp] 58 / 1e-09 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10019089 [exp] 57 / 1e-09 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10024823 [exp] 57 / 2e-09 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 54 / 1e-08 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1) Lus10034662 [exp] 54 / 2e-08 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017871 [exp] 52 / 2e-08 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120002 [exp] 89 / 8e-23 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.002G092300 [exp] 71 / 2e-14 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G087500 [exp] 68 / 4e-13 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.019G076800 [exp] 59 / 1e-10 AT1G71692 237 / 9e-80 XAANTAL1, AGAMOUS-like 12 (.1) Potri.013G102600 [exp] 57 / 4e-10 AT1G71692 250 / 4e-85 XAANTAL1, AGAMOUS-like 12 (.1) Potri.004G115400 [exp] 55 / 4e-09 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.012G133000 [exp] 54 / 9e-09 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.017G099800 [exp] 54 / 2e-08 AT5G60910 255 / 7e-86 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.010G154100 [exp] 54 / 2e-08 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.019G077200 [exp] 53 / 2e-08 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10018493 pacid=23180479 polypeptide=Lus10018493 locus=Lus10018493.g ID=Lus10018493.BGIv1.0 annot-version=v1.0 ATGGCCCGTCGCAAGTTCTTCATGAAGAAGAAGAAGAAGGTTAGCTCTTACTGTAAGCAGAGAGATGGGATGGTGAAGAAGGCCAATGAGTTGTCTGAGC AATGTGGGGTTGATGTTGGCCTCATCATGTTCTCTCCCAAGGGAAAGCTGACGACTTTCGCCACCAAGGGGAGGATCGAGGATGTGTTCCTTCGTTACAT CGAACGATCGGATGAAATCGAGAGTCAAGAAGAGAATCTGTACCGTTCACTCAAGCAGCTGAGACATGAAGGAGAAGTGCTGGAGAAGCTGGCTAGGATT GAGGCTCTTGAGGAGGAACTTCAGGAGCTGAACAAACAGCAGAGCCAAAAGGAAGAACAGCTCAAGTGTTACAACTTGGATGTGCAGAAGATAGGTTCCA TCAGTGAGGCCTTACTACACCAGCAGTTCCTCACCAATGCAATCCAGAATATCCAACGGCTGAAACTGCAGCAGAACCTCATCAACCAGATAAAGCTTCG AAACCCGGCAAATTTCGAGGTGGCTGGTTTGACGGCAAAGGAATCCATTGAGAAACAGAGGAATCAAGCAGGGGATTATGGAGGAAGCAGTTCAGGAGGA CCGCATCTGAGCCTTGAGTTCTTGAAAAAGCAGCAGCACTGGAATCTCAGAATCAACCACTGA
AA sequence Show only first row Show all	>Lus10018493 pacid=23180479 polypeptide=Lus10018493 locus=Lus10018493.g ID=Lus10018493.BGIv1.0 annot-version=v1.0 MARRKFFMKKKKKVSSYCKQRDGMVKKANELSEQCGVDVGLIMFSPKGKLTTFATKGRIEDVFLRYIERSDEIESQEENLYRSLKQLRHEGEVLEKLARI EALEEELQELNKQQSQKEEQLKCYNLDVQKIGSISEALLHQQFLTNAIQNIQRLKLQQNLINQIKLRNPANFEVAGLTAKESIEKQRNQAGDYGGSSSGG PHLSLEFLKKQQHWNLRINH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10018493 [exp]	0	1
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	4.0	0.9205
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	6.0	0.9022
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004602 [exp]	6.3	0.6993
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	7.3	0.9022
					Lus10011276 [exp]	7.7	0.8953
					Lus10034069 [exp]	8.9	0.8944
AT5G42540		AtXRN2, XRN2	exoribonuclease 2 (.1.2)		Lus10009577 [exp]	9.9	0.8842
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	10.4	0.8854
AT3G04950			unknown protein		Lus10022395 [exp]	11.0	0.6367
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	12.0	0.8821

Compare expression of checked genes

Lus10018493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.