Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 437 / 2e-140 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 432 / 3e-140 AFH3 formin 3 (.1.2) AT5G67470 286 / 4e-84 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 289 / 6e-84 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT3G05470 285 / 1e-83 Actin-binding FH2 (formin homology 2) family protein (.1) AT2G43800 265 / 3e-76 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 214 / 6e-59 ATFH8 formin 8 (.1) AT1G59910 213 / 7e-58 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 189 / 3e-50 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 160 / 1e-40 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039705 [exp] 776 / 0 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10015091 [exp] 587 / 0 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 587 / 0 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10036609 [exp] 438 / 1e-140 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011168 [exp] 430 / 1e-137 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10035827 [exp] 421 / 3e-134 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 418 / 4e-133 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011524 [exp] 304 / 6e-90 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 301 / 8e-89 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119900 [exp] 491 / 2e-161 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 462 / 1e-149 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 456 / 4e-147 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 309 / 3e-92 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 297 / 1e-87 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 286 / 2e-83 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.014G174700 [exp] 283 / 1e-81 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 280 / 4e-81 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.017G009900 [exp] 279 / 6e-81 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 279 / 3e-80 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10018494 pacid=23180470 polypeptide=Lus10018494 locus=Lus10018494.g ID=Lus10018494.BGIv1.0 annot-version=v1.0 ATGGGATCAGGAAGAGCCTGTTACGTAACTGTCTGTTTGATTCTGCTTTTTTTGGTGGCCGCCACTGGTGATGATTCTGGCAATCAACGTCCTCAGGTGA AGGAAGAAATGCTTTCATTAACATGGGAAACTGAATGGGAAATGATATCCCAGGCAGAACAAGCATGGATTTACTGCAGGAAAGGGGTTGGCAAAGATAC ATCGAAAGATTGTGACTTGTTCTATCTACTGGAATCCGCCAGTGAATTTGATTCATCCTTGTTAGCGAGCAGAAGAATGCAGAATGCTGTCAGAGTTCTA CCCCTTGGAGTGAAGAAGGAAATTCTGCATTGCCTAAGAAAGAAACGTCTTTCTGGTGATTTTTACAATAAAGGCAGCTCGCGAAACTACTGGCTTATTG ACTGTTTACAGCTGGTTTTGGATTGGCCTATGACTGATGCACAATATCTGACTGGTTACTATGATGTCCAAACTTCGCTGAAGCTTCATCAGCGACGAGA GCTTGCCTCTGCGGATGTTGATGGCTCGTCGGATTCTGATTCGGACACTAGGGAGCATAAGAAGCGTAAAAAGAACGATGTTGAGAAGAAAACAATTGTA GCCATTGTTGTAACAACAGTAGCAACCTTGGTGATCGTAGCAGTGCTGTTCTGCTGCTGGCTTCGGTTGAGGAATAGCGAATCGGAAATGAATTATATCG AAGGGAAAAGAGACGAGAGGCCTCTTGTCCACTTAAGTGATTCTTGTGCGAACACCTCACTTGCTACTGCAAGTATGGCAAGCTCGAGTACTAAGGATCC GAAGTCTAGTGGTACTATGACTGAAGCTCCTGTAAGCAACCAGCAGCCTATTATCATGGAGGAAGGACAATCGTCTGAAACGAAACAAGATGCAGGAGAT GAGGATGGTGATGATGAGATTTCACCTCTAAAGCCTCCTCCGGGAAGGCCAGAGCCTCCACCACCGGCCACCCCTCCACCACCACCGCCACCTCGTGCTG CTGCTGCTCCGACACCACCCCAAAACCACTGGGACCAAAGCGAGGTTCCGGCCAGTCCTAATCACTCCATGGTCTGGCATGAGATTAACGATGGATCATT CCAGTTTGACGAGGAGATGATAGAGTCATTATTTGGGTACACAACGGCTAATAAGAATAAGAATGAGCGTAGGAGAGATTTGGCTGACGTTCAGTATGTT CGCATTATCGATCCTAGGAAGGCTCAAAATTTGTCTATACTTCTGAGAGCTCTGAATGTGACTACTGAAGAAGTTCTCGATGCTCTGCGAGAAGCTAACG AGCTTCCAGTGGAGCTTCTCCAAACTCTGCTGAAGATGGCACCAACAACAGACGAGGAATTGAAGCTGAGGTTGTTTGCTGGTGAAATCACTCAGCTCGG GCCTGCAGAACGTTTCCTGAAAGCGTTAGTGGAAGTTCCATTCGCCTTCAAGAGAATCGAATCGCTTCTGTTCATGAGCTCCCTTCAGGAAGAAGTCACC ACACTCAAAGAAGCCTTTACAACTCTTGAGATCGCTAGCAACAAACTCAGAAACAGCAGGCTATTCCTGAAACTATTGGAAGCAGTTCTCAAAACCGGCA ACCGGATGAACGATGGCACGTACCGCGGTGGCGCGTTAGCATTCAAGCTCGACACGCTTTTAAAGCTCTCCGATGCATACGCACTGTCCGATCAGCAAAG GAAGACGCAACAGCACGAGCCAAGCGCTGCCTCCAGCGTAATCTCAGACGATTTCAGTGAAGACCCCGATGATCATACAGCAGACGAGCACTACTGCAAC CTCGGCCTCCAAGTGGTTTCGAGCTTAAGCAGCGAATTCGAAGAAGTGAAAAACGCAGCACTGCTAGACGGTGACATGCTGTCATCCACACTGTCCAAAC TCAGGCAGTCCTTCACAAAGGCCAAAGGCTTTGTAGAGTCCGACATGAAGAGCGACAAAGAGAGCGAGTTCTACAACTCCCTCGTGGCGTTCATGGACCG AGCAGACTCCGACATCTCCTGGCTTTCAGAGGAAGAGAAGAGGATAACAGCTCTGGTGAAGAGCACGGCGGATTACTTCCATGGCAAATCAGGTAAAGAA GAAGGGCTTCGGCTCTTCATCATCGTGCGCAGCTTCTTGACGATGCTGGACAAGGCCTGCAAAGAAGTTCAAGATGCCAGAGCGAAGAAACAGATTGCTC TGGTGAAAGTACCTGCAAAGAAAGAACACTACTCTCCAAGTGAAGCTTCGAGTATGGCAGTAAAACAGCAGTTTCAGCAGCAGCCGGAGAATCATCATTC TCTTAAGCGGTTGTTTCCAGCCATTGCTGAAAGACAGGATGATTCCTTTAGCTCAGATGATGAAGATTTAGTTGTCCCTCTCTGA
AA sequence Show only first row Show all	>Lus10018494 pacid=23180470 polypeptide=Lus10018494 locus=Lus10018494.g ID=Lus10018494.BGIv1.0 annot-version=v1.0 MGSGRACYVTVCLILLFLVAATGDDSGNQRPQVKEEMLSLTWETEWEMISQAEQAWIYCRKGVGKDTSKDCDLFYLLESASEFDSSLLASRRMQNAVRVL PLGVKKEILHCLRKKRLSGDFYNKGSSRNYWLIDCLQLVLDWPMTDAQYLTGYYDVQTSLKLHQRRELASADVDGSSDSDSDTREHKKRKKNDVEKKTIV AIVVTTVATLVIVAVLFCCWLRLRNSESEMNYIEGKRDERPLVHLSDSCANTSLATASMASSSTKDPKSSGTMTEAPVSNQQPIIMEEGQSSETKQDAGD EDGDDEISPLKPPPGRPEPPPPATPPPPPPPRAAAAPTPPQNHWDQSEVPASPNHSMVWHEINDGSFQFDEEMIESLFGYTTANKNKNERRRDLADVQYV RIIDPRKAQNLSILLRALNVTTEEVLDALREANELPVELLQTLLKMAPTTDEELKLRLFAGEITQLGPAERFLKALVEVPFAFKRIESLLFMSSLQEEVT TLKEAFTTLEIASNKLRNSRLFLKLLEAVLKTGNRMNDGTYRGGALAFKLDTLLKLSDAYALSDQQRKTQQHEPSAASSVISDDFSEDPDDHTADEHYCN LGLQVVSSLSSEFEEVKNAALLDGDMLSSTLSKLRQSFTKAKGFVESDMKSDKESEFYNSLVAFMDRADSDISWLSEEEKRITALVKSTADYFHGKSGKE EGLRLFIIVRSFLTMLDKACKEVQDARAKKQIALVKVPAKKEHYSPSEASSMAVKQQFQQQPENHHSLKRLFPAIAERQDDSFSSDDEDLVVPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10018494 [exp]	0	1
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	12.6	0.8003
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004934 [exp]	18.7	0.7957
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	30.9	0.7887
AT3G22450			Ribosomal L18p/L5e family prot...		Lus10010558 [exp]	84.9	0.7339
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	95.2	0.7047
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	97.4	0.6937
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	132.5	0.6866
AT3G09950			unknown protein		Lus10038794 [exp]	134.6	0.6869
AT4G11780			unknown protein		Lus10024488 [exp]	141.0	0.6941
					Lus10023382 [exp]	237.9	0.6439

Compare expression of checked genes

Lus10018494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.