Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32280 184 / 2e-60 Protein of unknown function (DUF1218) (.1) AT4G21310 174 / 3e-56 Protein of unknown function (DUF1218) (.1) AT1G11500 81 / 2e-19 Protein of unknown function (DUF1218) (.1) AT1G05291 78 / 3e-18 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039706 [exp] 253 / 3e-87 AT2G32280 222 / 4e-75 Protein of unknown function (DUF1218) (.1) Lus10038567 [exp] 209 / 3e-70 AT2G32280 218 / 1e-73 Protein of unknown function (DUF1218) (.1) Lus10018386 [exp] 161 / 5e-51 AT4G21310 252 / 5e-87 Protein of unknown function (DUF1218) (.1) Lus10007626 [exp] 160 / 1e-50 AT4G21310 252 / 6e-87 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G040900 [exp] 210 / 2e-70 AT2G32280 240 / 2e-82 Protein of unknown function (DUF1218) (.1) Potri.007G119600 [exp] 206 / 6e-69 AT2G32280 227 / 3e-77 Protein of unknown function (DUF1218) (.1) Potri.004G031200 [exp] 169 / 3e-54 AT4G21310 226 / 1e-76 Protein of unknown function (DUF1218) (.1) Potri.011G031500 [exp] 167 / 3e-53 AT4G21310 258 / 3e-89 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10018495 pacid=23180407 polypeptide=Lus10018495 locus=Lus10018495.g ID=Lus10018495.BGIv1.0 annot-version=v1.0 ATGGGGAAAACACTAGGCATCTTCATCTGCATCTTGATCGTAGCAATGGACATCGGGGCCGGACTCCTAGCCTTCCAAGCTGAAGAATCACAGAACAAGG TTAAGCACTTGAGGATGTGGATATTCGAGTGCCGGGAACCGAGCAACGCAGCATTCGAGCTCGGGCTAGCGGCAGCCGGACTCCTTGTTCTTGCACATGC CATAGCCAACTTGCTAAGTGGCTGCCTCTGCATCTGCTCCCAAGAGGAACTCCACAGGGCTTCCCCTCACAGGCAGCTATCTGTAGCTTGCTTCTTCCTT ACTTGGATCGTATTGGCGATGGCCCTGGCGATGGTGGTGATTGGGACACTGTCAAACAACAAGTCTAGAGCTTCCTGTGGATTCACAAAACACCATTTCT TCTCCATTGGAGGGATCTTGTGCTTCGTTCATGCCCTCTTTTCTGTTGCTTATTACATCACCGCCACTGCTGCTGCTAGTGATGATGATGACAAGTAG
AA sequence Show only first row Show all	>Lus10018495 pacid=23180407 polypeptide=Lus10018495 locus=Lus10018495.g ID=Lus10018495.BGIv1.0 annot-version=v1.0 MGKTLGIFICILIVAMDIGAGLLAFQAEESQNKVKHLRMWIFECREPSNAAFELGLAAAGLLVLAHAIANLLSGCLCICSQEELHRASPHRQLSVACFFL TWIVLAMALAMVVIGTLSNNKSRASCGFTKHHFFSIGGILCFVHALFSVAYYITATAAASDDDDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32280			Protein of unknown function (D...		Lus10018495 [exp]	0	1
AT2G32280			Protein of unknown function (D...		Lus10039706 [exp]	12.6	0.5972
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10007193 [exp]	18.5	0.5778
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	24.5	0.5922
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010028 [exp]	67.8	0.5055
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	73.4	0.5516
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10004913 [exp]	87.1	0.5516
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	150.2	0.5086
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Lus10029101 [exp]	188.5	0.4801
					Lus10013529 [exp]	196.0	0.4744
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	295.0	0.4681

Compare expression of checked genes

Lus10018495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.