Plant FIBer expression Database

Lus10018497 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11480 241 / 1e-71 eukaryotic translation initiation factor-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039708
[exp]
1068 / 0 AT1G11480 237 / 3e-70 eukaryotic translation initiation factor-related (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G119200
[exp]
507 / 3e-174 AT1G11480 145 / 7e-37 eukaryotic translation initiation factor-related (.1.2)
Potri.017G041300
[exp]
483 / 5e-165 AT1G11480 263 / 3e-80 eukaryotic translation initiation factor-related (.1.2)
Potri.011G031900
[exp]
259 / 5e-78 AT1G11480 318 / 9e-101 eukaryotic translation initiation factor-related (.1.2)
Potri.004G169100
[exp]
52 / 9e-07 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Potri.009G130200
[exp]
51 / 2e-06 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10018497 pacid=23180457 polypeptide=Lus10018497 locus=Lus10018497.g ID=Lus10018497.BGIv1.0 annot-version=v1.0
ATGTCGAAGAAGAAAGTTTCCTCGACTATGTCCTTGAAGGACTTCCACGGCGGCTCGATTCCTTCTGATCTTCCTTTGCCCTCTGCTCCCGGAGTCGTGG
CAAGACCTGGTTCAGAACGTAATCCGACGACCAACTGGGGAAACAATTTGATGAGGACGGATCTCCGACCGAGGCCAAAGTCGTCTGGTGCATCTCGTGG
ATTCGACGAGAAAGCGTTGCTTCTCTCTCACCCTTCTCCTATAGGCAGAAACTTTGACGAGGATGAGCGTAAGCCATTAGACGGATCATCTGGTCCACGG
CGAACCATTAGTGACGAGAGTATTCAGAGGTCTGCCGTAGTTCAGCTGGAAGTGAAGCTGGACTATGCTTCTTCCGTGAGGCTACAGGATCGACCCTTGT
CAAGTCCAGGGATCCAGTCTTCTAGTTTGCGAACTGGTCCGACTGCATTAAGAACCGGGGCTGGATCTTCTGGTAATGGTCAGGGTGTCAATAATTTAAA
GGCTTCAAGTGTTTACAGTAGCCAGGAAGTGAACAACAATCCGCCGAATGCCTGGGGTCTGAAAAAAGATGTCAATGTCAATGCCAATGCCAATGAGTTC
GGTGCTCCATCACCGTTGGGGTCAAGTCCTGTCTCCAAAATAGCTCAAGCAAGTGCCATTGACAAGGTATCTTCTGGAATGTGGCAGTCAAAGAATCCTG
CCAACCTCTTACCTCCTCTGCTGTATTCAAAGGATAACGTCGTAACACATAATGGGGGTCTGAGTGGTCAGATAGAGAGGGGCGGTTATGATGCTTCCCA
TGCATTTGTAACTGAAACTGTTCCGCTGAACGAAGAAAGAAGCCGAGGATTGGGAAGGGAATTTCCCACCTATGGAATAGATCATCAGTCTCAAAGGCCT
AGAGAAGATGTGCTTCAGCTGCCACAAACTATACTTCCTGGTGTCTCGGAACAGCTTAAACCAAAGCTATACCAAAGATCGTTATCTTTGGAAACATCAA
ACATGGAATACAGACAGGGATACCAGCATGTTACACAGACGGGTCAGGTTGAATCTGTTTATGGATTGCATGGAGAAGCAATTTCCCCAAAACAAGGGCC
AGCTGGTGGTATGGCTAACAACAAACCAGCTGATAAGCCAGTTGAGCGTCCGAAACTGAACCTGAAGCCCCGATCCCAACCTCTTGAGAAATCTGACGGA
AATGCAGTGAAAGAAAGGTCATTGTTTGGTGGTGCTCGGCCGCGGGAGCTGGTTCTCAAGGAAAGAGGCATAGATGAAATCGAAATCAACAAGCTCGAAC
TCAGCCCTTCCCCTAAGAGGCCCAACTCCTCAAAGAACGAAGCAAGGCCAGCAGATCAGGCTCCAGCCAAGACCGATAGTCGCACTCCAACCAACAGGAG
GACCGGAGGAAGGGATTTTGAAAGGAAGGATCAGAAGCCGTCCTCTGAAACAGAGAAACCGGATCAAGAGAGGAAGAGGTGGCGTAACGACAAGTGGAAG
AGCAACAAAGAGATCGTCAAAGAACAGCGTCCCGAGCCTGAAACCTGGCGCAAACCTGTCGAAGAAGAGCCAAAGCCCGCACCAGGAGGCGGCAAACTGG
TCTCTGCCCTCGAGCTCGCTCAAGCATTCTCGAAGTCGGTCTCGGTTCCGAAAGCCAACGATCTGCGGTCGCCCCACCAAGGACCGGTCAGGCACAGCGA
CAACAACGGTAGTCAGGTACCGTTTTCTCGATTGACGGAGACTCGCGATCTCCACCACCCGGCACCAGCGACTGCAAGGCACCGGCTGAATGGTTACTAA
AA sequence
>Lus10018497 pacid=23180457 polypeptide=Lus10018497 locus=Lus10018497.g ID=Lus10018497.BGIv1.0 annot-version=v1.0
MSKKKVSSTMSLKDFHGGSIPSDLPLPSAPGVVARPGSERNPTTNWGNNLMRTDLRPRPKSSGASRGFDEKALLLSHPSPIGRNFDEDERKPLDGSSGPR
RTISDESIQRSAVVQLEVKLDYASSVRLQDRPLSSPGIQSSSLRTGPTALRTGAGSSGNGQGVNNLKASSVYSSQEVNNNPPNAWGLKKDVNVNANANEF
GAPSPLGSSPVSKIAQASAIDKVSSGMWQSKNPANLLPPLLYSKDNVVTHNGGLSGQIERGGYDASHAFVTETVPLNEERSRGLGREFPTYGIDHQSQRP
REDVLQLPQTILPGVSEQLKPKLYQRSLSLETSNMEYRQGYQHVTQTGQVESVYGLHGEAISPKQGPAGGMANNKPADKPVERPKLNLKPRSQPLEKSDG
NAVKERSLFGGARPRELVLKERGIDEIEINKLELSPSPKRPNSSKNEARPADQAPAKTDSRTPTNRRTGGRDFERKDQKPSSETEKPDQERKRWRNDKWK
SNKEIVKEQRPEPETWRKPVEEEPKPAPGGGKLVSALELAQAFSKSVSVPKANDLRSPHQGPVRHSDNNGSQVPFSRLTETRDLHHPAPATARHRLNGY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11480 eukaryotic translation initiat... Lus10018497
[exp]
0 1
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Lus10034469
[exp]
1.4 0.9434
AT5G01160 RING/U-box superfamily protein... Lus10021125
[exp]
3.0 0.9400
AT4G09980 EMB1691 EMBRYO DEFECTIVE 1691, Methylt... Lus10038853
[exp]
3.5 0.9419
AT5G43060 Granulin repeat cysteine prote... Lus10014087
[exp]
3.6 0.9138
AT3G02540 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATI... Lus10041464
[exp]
5.0 0.9254
AT5G14530 Transducin/WD40 repeat-like su... Lus10014558
[exp]
5.2 0.9202
AT1G03910 unknown protein Lus10035558
[exp]
5.7 0.9292
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Lus10037620
[exp]
7.1 0.9167
AT1G17070 GC-rich sequence DNA-binding f... Lus10000930
[exp]
8.8 0.9008
AT5G52640 AtHsp90-1, ATHS... HEAT SHOCK PROTEIN 83, HEAT SH... Lus10038845
[exp]
11.0 0.9232

Lus10018497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.