Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22104 391 / 3e-131 Phototropic-responsive NPH3 family protein (.1) AT3G19850 248 / 3e-75 Phototropic-responsive NPH3 family protein (.1) AT1G50280 209 / 7e-61 Phototropic-responsive NPH3 family protein (.1) AT5G66560 185 / 5e-51 Phototropic-responsive NPH3 family protein (.1) AT5G03250 179 / 1e-49 Phototropic-responsive NPH3 family protein (.1) AT3G08570 176 / 4e-48 Phototropic-responsive NPH3 family protein (.1) AT3G50840 172 / 4e-47 Phototropic-responsive NPH3 family protein (.1) AT3G44820 168 / 5e-45 Phototropic-responsive NPH3 family protein (.1) AT5G13600 161 / 6e-43 Phototropic-responsive NPH3 family protein (.1) AT3G08660 159 / 3e-42 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039710 [exp] 920 / 0 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 219 / 3e-64 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 196 / 6e-55 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10012901 [exp] 191 / 3e-53 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 178 / 1e-48 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 174 / 4e-47 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 171 / 5e-46 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 171 / 6e-46 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 170 / 1e-45 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118800 [exp] 577 / 0 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 561 / 0 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.004G030600 [exp] 375 / 9e-125 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 368 / 7e-122 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.010G170900 [exp] 283 / 1e-88 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 264 / 3e-81 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 182 / 3e-50 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 180 / 3e-49 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 178 / 1e-48 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 178 / 1e-48 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10018499 pacid=23180476 polypeptide=Lus10018499 locus=Lus10018499.g ID=Lus10018499.BGIv1.0 annot-version=v1.0 ATGATTTCTTCATATTCAGGCAGACTAAGCAAGCTGTTTGGGAAGTCAACTTATGGTGCTCAGAATCTTAAGGTGTTGTTCAATGATTTCCCAGGAGGAT CTGAAGGATTCGAGCTCATGTTAAGATTCTGCTACAACAATGGGCAGATACACATAACTCCTTCCAACCTTTCCTTGCTGCATTCTGCTGCAAAGTTCAT GGAGTTGACCGTTGACTCATCACCATCTGGCCTTAACTTGCTGGAACTGACCGAGAAATCGCTTCGAGAGCAGATTGGTTACTGGACTTGGTCTGATCTC TTGGTCACCTTAAAGCATTGCCAAGACTTGGACTCAAATAATAATTACTCTTCTTCCATTATCGAGAAGTGTATAGATTCACTCATTGCAAGGATGGCTT TGTGTAATGATCATTCCAGTCCATGCCCTTCAACTTCTTCTTCGCTTGATAGCTCCGGTACCGTTCGAGTTTCGTGTGATAGTAGGAGCACTGAGAGTAC CCTCAAGACCAGCTTATCTACTAGAGGAGGAGCCACTTGGTGGTTTGAGGATCTATCTGGTTTGACTTTGACTTTTGTTGAGATTCTCATCAAGTCAATG GTACTATCCAAGAAGTTTGACCATGGAACTATCAGCAGATTCCTCTTTTACTACCAGAAATCGAAGTCTGATGAGAAGGAGAAGCTGAAAACGGTCGAAT CGGTCATTGACTTGCTCCACATACTCGACTCGAGTTCGGTTCCTTGCAAGAGCTTATTCGGTTTGCTTCGAGTTGCTTCGAATGCAAGCAAATGCAGTAG AAGCAAGGTGGAAGGCATGATAGGCTCTCAGTTGGACCAATCAACTCTGGATAATCTTCTCATTCCATCCCGAACTGGGTGTTCGAAAAATTGTCTGTAT GATGTAAATGTTGTTCTGAGGTTGGTAAAGATGTTTCTCCACGAGGGAAGAACGTTTCGAGCGTATCCTAATCGATTGAAGAAGGTTTCGAGTTTGATGG ATATGTACATTGCTGAAGTGGCCCCTGACCCTTGTCTGAAACCTTCAAAGTTTTTAGCTTTAGCCATGGTGTTGCCTGATTCTGCTCGAGACTCGTACGA TGACATGTACCGTGCTATGGAAATGTATCTCGAGGTGCACAGTGGAATCTCTGATGAAGAAAAGATGAAGATATGTTGTGCACTAAACTACGAGAAGGTT TCAAGCGAAGTATGTATGCAGATTTCTCGGAACAAGAAGTTCCCATCAAGAACAGAAATCCAAGCTTTGATGTCTCAACAAGTGAAGCTCAATAACCTGT TACAAGCTCAAGAACCTGTTACAAGCTTAGTCGAAAAAAGGGATCCTAAGGAGAAGAAGACCGAGGAGCAAATCGTTCTGTACGCTGCCAAGCTCGAATT CTCGAGCGATAACGAGAGGCTTAGAGCGCATTTGGAAGGGATGCAGTGGAGGGTGATGGAACTCGAGAAAGTGTGCAGGAAGATGCAGACAGAGATGACA AGGATCATGCGATCGAAGAGTACTCCGAATCGTGGTAATAACTTGCGATCTTTGCCAAAGATGTGTTCTTGA
AA sequence Show only first row Show all	>Lus10018499 pacid=23180476 polypeptide=Lus10018499 locus=Lus10018499.g ID=Lus10018499.BGIv1.0 annot-version=v1.0 MISSYSGRLSKLFGKSTYGAQNLKVLFNDFPGGSEGFELMLRFCYNNGQIHITPSNLSLLHSAAKFMELTVDSSPSGLNLLELTEKSLREQIGYWTWSDL LVTLKHCQDLDSNNNYSSSIIEKCIDSLIARMALCNDHSSPCPSTSSSLDSSGTVRVSCDSRSTESTLKTSLSTRGGATWWFEDLSGLTLTFVEILIKSM VLSKKFDHGTISRFLFYYQKSKSDEKEKLKTVESVIDLLHILDSSSVPCKSLFGLLRVASNASKCSRSKVEGMIGSQLDQSTLDNLLIPSRTGCSKNCLY DVNVVLRLVKMFLHEGRTFRAYPNRLKKVSSLMDMYIAEVAPDPCLKPSKFLALAMVLPDSARDSYDDMYRAMEMYLEVHSGISDEEKMKICCALNYEKV SSEVCMQISRNKKFPSRTEIQALMSQQVKLNNLLQAQEPVTSLVEKRDPKEKKTEEQIVLYAAKLEFSSDNERLRAHLEGMQWRVMELEKVCRKMQTEMT RIMRSKSTPNRGNNLRSLPKMCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10018499 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	3.7	0.8317
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034350 [exp]	3.7	0.7846
AT3G61660			unknown protein		Lus10032366 [exp]	4.7	0.7723
AT4G37080			Protein of unknown function, D...		Lus10021756 [exp]	4.7	0.7932
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	6.6	0.8097
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	11.0	0.7977
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	13.9	0.8070
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	18.7	0.7911
AT2G19740			Ribosomal protein L31e family ...		Lus10025830 [exp]	19.7	0.8112
					Lus10017807 [exp]	21.0	0.7563

Compare expression of checked genes

Lus10018499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.