Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16740 404 / 2e-134 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 390 / 5e-129 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 384 / 2e-126 AtTPS10 terpene synthase 10 (.1) AT3G25830 383 / 5e-126 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 383 / 5e-126 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16730 370 / 7e-122 AtTPS02 terpene synthase 02 (.1) AT1G61680 241 / 9e-72 ATTPS14 terpene synthase 14 (.1.2) AT5G23960 231 / 1e-68 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 221 / 4e-64 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 219 / 1e-63 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039713 [exp] 712 / 0 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10018501 [exp] 703 / 0 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10006355 [exp] 358 / 1e-115 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10006356 [exp] 357 / 1e-115 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10012312 [exp] 356 / 3e-115 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10033643 [exp] 343 / 3e-110 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10025922 [exp] 338 / 2e-108 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10001110 [exp] 331 / 2e-106 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 331 / 8e-106 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118600 [exp] 600 / 0 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 517 / 2e-178 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023006 [exp] 439 / 5e-148 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 435 / 4e-147 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 420 / 1e-140 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 415 / 2e-138 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G022338 [exp] 404 / 2e-134 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023020 [exp] 363 / 1e-121 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G031800 [exp] 355 / 2e-115 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 356 / 7e-115 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10018500 pacid=23180451 polypeptide=Lus10018500 locus=Lus10018500.g ID=Lus10018500.BGIv1.0 annot-version=v1.0 ATGGCATCTTTAACCGCCGGCGGCCGGCTCAAAGTAGTAGCGGCATCATCGGCGGCGGATGTTGATCACCGGCGGCGCTCTGCCAATTACAAACCAACAA CGTGGAATCACGAGTTTCTCCAGTCCTTCAAGGTCAACAATGACGCCAACAATGAAGATCAACTATATAAGGACAAGGTGGTGGTCATGCTGGAGAAGGA GCTTCAAGCCGGCGAGATAATGAAGGAGGAAGATGTTTTGAATATGCTTGAACTCGTCGATGATATTCAGAGGTTGGGGTTGTCACAACGATTCGAAAAG GCTATCCGCGGAGCTCTCGATCGATTCATCTTCACCGGAGGGTGTAATGCCATAACAAATAAGTCCATCTACTATGTAGCTCTCGGGTTCAGACTCCTTA GACAGAACGGTTATCACGTTTCTCAAGATGTGTTGAAAGAGTTGATGAACGACGAAGGTGTGTTCGAGGGAGATGCAAAAGACATGTTGAGTTTGTACGA AGCTTCGTACGTTGCTTATGAAGGTGAAGACATGTTGGATAAGGCCATGGAGCAAACGACCAACTACCTCAACAACTTTCTGTTACGGACGACGAACTCT AGTAGTACTAGTACCAGTAGTATGCAAGAACTAGTTCGTCACTCTCTGGAGATTCCCCTGCATCGAAGAGCCGAGATTCTAGAAGCTAGATGGTACGTCG AAGCATATAAGAAGAGAAAAGGTGTAAATCCTGAACTGCTTCAGCTAGCCACTCTAGAGTTCAACTCCGCTCAGTCGGTCCTCCAGAGCGACCTCAAAGA CTCATCAAGGTGGTGGAATAGCTTGGGACTTGCGAAAAAGCTGAGTTTCAGCAGGGACAGATTAGTGGAGTGTTTTCTGTGGGCGGCTGGAACGATGTTG TTCCAGCCGCAATCCAGCTCGTGTCGCAAGAGTTTAACAAAGGTCACCTCGTTCGTTACCACAATCGACGACATCTACGATGTCTACGGCACTTTAGAGG AGTTGCAACTATTCACCGATGCAGTCGAGAGGTGGGACATCAATGCTGTGGACAACTTACCAGACTACATGAAGCTGTGTTTCTTAGCCTTCTACAACAC CGTCAATGACATGGCTTACGAAGCTCTCCTTATACATGGACATAACGTCTTACCCTGCCTTTCCAAATCGTGGGCGGATTTGCTCAAGGCGTTCTTGAAA GAAGCAGAGTGGACGTACCCCGACAACCCACCGACGTTCTCGGAGTACGTAGAGAATGCATGGAGATCTGTCTCGGGAACGGTGATCCTTGTCCATGCAT ATTGTCTGATGAATGACGATGTTCACGTAAGTAGCTTCTCTAAGGAGACGCTTGATGACTTGATGAACTACGACAGAATCCTCCGCTGGCCGTCGGTCAT TTTCCGGCTCTGCAATGATCTTGCTACTTCGCCGGAAGAGATGGCGAGAGGAGAGACGGTGAACGCGATGTCGTGCTACATGAGCGAGAACGGAGTTAGT GAAGAGAAGGCAAGGAAGCACTTGAACTCCATGATTGACCAAGCTTGGAAGAACATGAACCGGGAGCTATTAGAAGATCATGACGAGAAATCGGGGGCTG AGTTTGCGAATTTGTATCGAAGATCGGCGATGAATCTGGCGAGGATCACTTATTATAGTTACAGGCGTGGAGACAGCCACGGGAATCCAGATGCCGAGTC CAACCAGACTGTCTTCTCCCTCTTCTTCCAGCCCATCGTTACTAAGGCTTAA
AA sequence Show only first row Show all	>Lus10018500 pacid=23180451 polypeptide=Lus10018500 locus=Lus10018500.g ID=Lus10018500.BGIv1.0 annot-version=v1.0 MASLTAGGRLKVVAASSAADVDHRRRSANYKPTTWNHEFLQSFKVNNDANNEDQLYKDKVVVMLEKELQAGEIMKEEDVLNMLELVDDIQRLGLSQRFEK AIRGALDRFIFTGGCNAITNKSIYYVALGFRLLRQNGYHVSQDVLKELMNDEGVFEGDAKDMLSLYEASYVAYEGEDMLDKAMEQTTNYLNNFLLRTTNS SSTSTSSMQELVRHSLEIPLHRRAEILEARWYVEAYKKRKGVNPELLQLATLEFNSAQSVLQSDLKDSSRWWNSLGLAKKLSFSRDRLVECFLWAAGTML FQPQSSSCRKSLTKVTSFVTTIDDIYDVYGTLEELQLFTDAVERWDINAVDNLPDYMKLCFLAFYNTVNDMAYEALLIHGHNVLPCLSKSWADLLKAFLK EAEWTYPDNPPTFSEYVENAWRSVSGTVILVHAYCLMNDDVHVSSFSKETLDDLMNYDRILRWPSVIFRLCNDLATSPEEMARGETVNAMSCYMSENGVS EEKARKHLNSMIDQAWKNMNRELLEDHDEKSGAEFANLYRRSAMNLARITYYSYRRGDSHGNPDAESNQTVFSLFFQPIVTKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	0	1
					Lus10031880 [exp]	1.0	0.9289
					Lus10039453 [exp]	2.4	0.9016
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	4.0	0.8956
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	8.2	0.8702
					Lus10031312 [exp]	8.7	0.9081
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	13.9	0.9115
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	14.5	0.9059
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	16.7	0.8883
AT5G38200			Class I glutamine amidotransfe...		Lus10035996 [exp]	21.2	0.8655
AT3G14260			Protein of unknown function (D...		Lus10001484 [exp]	23.3	0.9093

Compare expression of checked genes

Lus10018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.