Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16740 380 / 6e-125 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 365 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 362 / 2e-117 AtTPS10 terpene synthase 10 (.1) AT3G25830 354 / 2e-114 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 354 / 2e-114 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16730 337 / 2e-108 AtTPS02 terpene synthase 02 (.1) AT1G61680 215 / 5e-62 ATTPS14 terpene synthase 14 (.1.2) AT5G23960 207 / 2e-59 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 203 / 3e-57 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 189 / 6e-52 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039713 [exp] 976 / 0 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10018500 [exp] 673 / 0 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10006356 [exp] 353 / 2e-113 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10012312 [exp] 345 / 2e-110 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006355 [exp] 338 / 7e-108 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10033643 [exp] 319 / 3e-100 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10001110 [exp] 298 / 2e-93 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 297 / 3e-92 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10007624 [exp] 295 / 4e-92 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118600 [exp] 541 / 0 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 477 / 3e-162 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023006 [exp] 422 / 6e-141 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 418 / 7e-140 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 388 / 2e-127 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 372 / 2e-121 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 367 / 3e-119 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G031800 [exp] 348 / 3e-112 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 339 / 7e-108 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G023020 [exp] 311 / 5e-101 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10018501 pacid=23180496 polypeptide=Lus10018501 locus=Lus10018501.g ID=Lus10018501.BGIv1.0 annot-version=v1.0 ATGAGTTATCTCTGTCTGATCCACAGCATGTCGTTGAACCGCAACATCGTACCCCTTCATCGTCGTCTTCCTTCTGCATCGGCCACACGTAGCACCACTC GGCCTCGAATAGTAGCAGCTCAAGTTGATCCTCCTCCTCAAGCATCGGCGGATTCCCAAATCAGGCGCTCCGCCAATTACAAACCGACATCGTGGGAGTA CGAGTTCCTCCAGTCCTTCGAGGTCAATGACATCAACAATGATGAATTCTACCAAGGCAGGGTAACAACGCTGGAGAGGAACTTGAAGCTGAAATTAGCC ACGGCGAAAATGGAGGATGGTGATGTCATCGACGGGTTAGAATTGATCGACGATATACAAAGGTTAGGATTGGCACACCGGTTCGAAAACGAAATACGAG AAGCTCTCGACAGACTTCTCGACAATGGAGGGTGTCATGCGTTGGCGAACAAGCACCCCTCTGTCGTCCATGATGTAGCTCTAGGGTTCAGACTCCTCAG ACAAAGTGGTTACCGTACCTCTCAAGACGTGTTCAAAGAGTTTCTCAAAGGAAACAACCACGACGAATGGGATGTGAAAGACATGTTGAGTCTGTACGAA GCTTCGTACCTCGCCCACGAAGGCGAAGAAATCCTGGACGAGGCTAGAGAATGGACGACGAAGTATCTACACAACTTTTTGCTACAAACCAACTGGAATG ATGAATATACGCCCGTTAAAGAACTAGTCCGCCATTCGCTCGAATTTCCACTTCATCGGAGGATGGAGATGCTAGAAGCGAGTTGGTACATCGAATCATA CAACAAGATCAACGCGGCGAAGCACCCTGCATTATTCGAGCTGGCCGCGTTGGAGTTCAACCTGGCTCAGTCGGTCCTCCAACGTGACCTAAAGGACGTG TCAAGGTGGTGGAGCAGCTTGGGGCTAGCAAAGGAGCTGAGTTTCAGCAGGGACAGATTGGTGGAGTGTTTTTTCTGGACAGTTGGAATGATGTTCCAGC CACGGTTCAGCTCGTGTCGAAAGAAGTTGACGAAAGTGACGTCGTTTATTACGACGATCGACGATATCTATGATGTTTATGGCACTCTGGAGGAGTTGGA GCTGTTCACTGATGCAGTTGAAAGATGGGATATAAATGCAGTGGGCACCTTGCCAGACTACATGAAGCCATGTTTCCTAGCTTTCCACAACACCGTTACC GAACTATCTTACCATACAAATGGGCATAACATCTTACCCCACCTCACAAAAGCGTGGACAGATATGCTCAAGGCATTCTTGAAAGAGGCAGGGTGGAGCT GCTACAACAAGAAGCAGAGTAGTGGACCACCGATGTTCTCAGAGTACATGGAAAATGCATGGAGATCTGTCTCCGGGACAGTGATTCTTGTCCACACGTA TTGTCTCCTGAACGACGATGTCGACGGCAACTTAGATGATAATTGTGTGTCAAAGGTGGGTTTGGAGAGCCACTTGATGAGCTACGACAAAATCCTTCGC TGGCCATCCGTCGTCTTCCGGCTTTGCAATGATCTGGCAACTTCATCGAGCGAGATAGCGAGAGGGGAGACGGTGAACGCAGTGTCGTGCTACATGAACG AGAACGGAGTCAGCGAAGAGGAGGCAAGGAAGCACTTGAACTCCATGATCGACCAAGCTTGGAAGAACATGAATCAAGAGCTATTGTTATTGTCATCACC AAACTCGTCGCCTGCTTTTGCGAACTCGTTTCTAAAGTCGGCGGTCAACCTAGCGAGGATCGCTCATCATACTTACCACCGTGGAGACAGCCACGGCGAT CCAGACGTTGGGTCCAAAAAGACAGTCTTCTCCCTCATCTTTCAGGCCATTAACGTCAACGCTTCAAGAATCTAG
AA sequence Show only first row Show all	>Lus10018501 pacid=23180496 polypeptide=Lus10018501 locus=Lus10018501.g ID=Lus10018501.BGIv1.0 annot-version=v1.0 MSYLCLIHSMSLNRNIVPLHRRLPSASATRSTTRPRIVAAQVDPPPQASADSQIRRSANYKPTSWEYEFLQSFEVNDINNDEFYQGRVTTLERNLKLKLA TAKMEDGDVIDGLELIDDIQRLGLAHRFENEIREALDRLLDNGGCHALANKHPSVVHDVALGFRLLRQSGYRTSQDVFKEFLKGNNHDEWDVKDMLSLYE ASYLAHEGEEILDEAREWTTKYLHNFLLQTNWNDEYTPVKELVRHSLEFPLHRRMEMLEASWYIESYNKINAAKHPALFELAALEFNLAQSVLQRDLKDV SRWWSSLGLAKELSFSRDRLVECFFWTVGMMFQPRFSSCRKKLTKVTSFITTIDDIYDVYGTLEELELFTDAVERWDINAVGTLPDYMKPCFLAFHNTVT ELSYHTNGHNILPHLTKAWTDMLKAFLKEAGWSCYNKKQSSGPPMFSEYMENAWRSVSGTVILVHTYCLLNDDVDGNLDDNCVSKVGLESHLMSYDKILR WPSVVFRLCNDLATSSSEIARGETVNAVSCYMNENGVSEEEARKHLNSMIDQAWKNMNQELLLLSSPNSSPAFANSFLKSAVNLARIAHHTYHRGDSHGD PDVGSKKTVFSLIFQAINVNASRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	1.4	0.9010
AT5G62680			Major facilitator superfamily ...		Lus10036669 [exp]	2.6	0.8404
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	3.5	0.8652
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	6.7	0.8619
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	7.4	0.8449
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	9.4	0.8582
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	9.5	0.8416
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012400 [exp]	11.5	0.8222
					Lus10015426 [exp]	11.7	0.8310
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	13.0	0.8102

Compare expression of checked genes

Lus10018501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.