Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12210 507 / 0 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2) AT3G12070 491 / 8e-177 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT2G39550 139 / 4e-38 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT5G40280 97 / 2e-22 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039714 [exp] 608 / 0 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10040303 [exp] 123 / 5e-32 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10032149 [exp] 94 / 2e-21 AT5G40280 465 / 1e-161 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10014536 [exp] 72 / 6e-14 AT5G40280 422 / 1e-144 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 59 / 5e-10 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10000944 [exp] 42 / 6e-05 AT2G39550 76 / 2e-17 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10017310 [exp] 40 / 0.0007 AT2G39550 86 / 4e-23 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012500 [exp] 539 / 0 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.008G054500 [exp] 146 / 7e-41 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.017G073200 [exp] 106 / 8e-26 AT5G40280 511 / 5e-180 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.004G132500 [exp] 46 / 3e-05 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.010G206001 [exp] 0 / 1 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10018502 pacid=23180512 polypeptide=Lus10018502 locus=Lus10018502.g ID=Lus10018502.BGIv1.0 annot-version=v1.0 ATGGGGGAGTTAGCATTAGCAGCTGATAAGCATGTGAAATACATCCTGCAAGTAGAGAAGAAGAAGGATAGTTTTGAATCTGCTGTAATGGAGCACCTAC GAATGAACGGGGCGTATTGGGGGTTGACGACATTGGATCTGCTAGGCAAGCTTGATCTGGTGGATTCGAATGAGATTCTTGAATGGATCATGAAGTGCCA ACATGAGTCTGGTGGATTTTCTGGTAATATTGGGCATGACCCTCATATACTGTATACCCTCAGTGCCATACAGGTTCTGGCTCTTTTCGACAAGCTCGAC GTTCTTGATATCGACAAAGTTTCAAATTATATTGCTGGACTGCAAAATGAGGATGGATCCTTTTCCGGCGATATTTGGGGAGAAGTCGATACACGGTTCT CTTACATTGCAATATGTAGTCTTTCGATAATAAAACGCCTGGACAGGATAAACGTGGAGAAGGCTGTGAGCTACATCATAAGTTGCCAAAACGTTGACGG TGGATTCGGATGCACTCCTGGCGGCGAGTCTCATTCCGGACAGATATTCTGCTGTGTGGCTGCACTTGCCATTACTGGAGCTCTACACTGTGTCGACAAG GACCTCCTAGGATGGTGGCTCTGTGAGCGACAGGTGAAATCCGGTGGTCTTAATGGCCGACCTGAGAAGCTTCCAGATGTTTGCTACTCGTGGTGGGTTC TCTCTAGCTTGACGATGATCGATAGAGTTGACTGGATTAACAAAAATAAACTGGCTAAGTTCATTTTGAACTGTCAGGACACGGAAAAAGGAGGAATTTC GGACAGGCCAGATGACGCGGTCGACATCTTCCATACATATTTTGGAGTTGCTGGATTGTCTCTGCTCGAGTATCCAGGAGTGAAGGCAATCGATCCGGCT TACGCCTTGCCGGTCGACATCGTGGATCGACTCTTCTTTGGCAAAAAATGA
AA sequence Show only first row Show all	>Lus10018502 pacid=23180512 polypeptide=Lus10018502 locus=Lus10018502.g ID=Lus10018502.BGIv1.0 annot-version=v1.0 MGELALAADKHVKYILQVEKKKDSFESAVMEHLRMNGAYWGLTTLDLLGKLDLVDSNEILEWIMKCQHESGGFSGNIGHDPHILYTLSAIQVLALFDKLD VLDIDKVSNYIAGLQNEDGSFSGDIWGEVDTRFSYIAICSLSIIKRLDRINVEKAVSYIISCQNVDGGFGCTPGGESHSGQIFCCVAALAITGALHCVDK DLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLTMIDRVDWINKNKLAKFILNCQDTEKGGISDRPDDAVDIFHTYFGVAGLSLLEYPGVKAIDPA YALPVDIVDRLFFGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	0	1
AT3G12070		AtRGTB2	RAB geranylgeranyl transferase...		Lus10039714 [exp]	2.6	0.9023
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10015862 [exp]	3.9	0.9145
AT5G16890			Exostosin family protein (.1)		Lus10039145 [exp]	4.0	0.9021
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	5.1	0.9147
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	6.2	0.9256
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	8.9	0.9060
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10037842 [exp]	13.3	0.8825
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	15.6	0.9110
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	16.1	0.9004
AT5G32440			Ubiquitin system component Cue...		Lus10039987 [exp]	16.9	0.8745

Compare expression of checked genes

Lus10018502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.