Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03210 439 / 9e-157 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT5G13870 323 / 5e-111 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT2G06850 310 / 6e-106 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT5G65730 303 / 6e-103 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G37800 301 / 2e-102 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT3G23730 301 / 3e-102 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 294 / 1e-99 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 290 / 5e-98 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 288 / 2e-97 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 282 / 4e-95 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039715 [exp] 606 / 0 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10031586 [exp] 539 / 0 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10033755 [exp] 393 / 1e-137 AT4G03210 340 / 5e-117 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10011052 [exp] 327 / 5e-112 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 324 / 3e-111 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 321 / 5e-110 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 317 / 2e-108 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039643 [exp] 296 / 3e-100 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 296 / 3e-100 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G125000 [exp] 496 / 2e-179 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.013G152400 [exp] 493 / 4e-178 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.007G008500 [exp] 322 / 9e-111 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.003G159700 [exp] 321 / 4e-110 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.001G071000 [exp] 319 / 2e-109 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 316 / 3e-108 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.013G005700 [exp] 298 / 1e-100 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077320 [exp] 292 / 8e-99 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.006G170100 [exp] 291 / 2e-98 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 291 / 2e-98 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10018503 pacid=23180368 polypeptide=Lus10018503 locus=Lus10018503.g ID=Lus10018503.BGIv1.0 annot-version=v1.0 ATGGCGGTCTCAATCTCCAGAGCTTCTCTTCTGATAGCACTTTTCATGGGATTCGCTGCTCTAGCTATAGTCAGCTCAGCTCCCGCCAAGTTTGATGACC TCTTCCAGCCGAGCTGGGCTTTTGATCACTTCGTCTATGAAGGAGAGCAGCTTAAGCTCAAACTTGATAACTATTCCGGTTCTGGGTTTCAATCGAAGAG CAAGTACCTATTCGGAAAGGTGACGGTTCAGATTAAGCTTGTGGAAGGCGACTCCGCCGGAACTGTTACAGCCTTCTACATGTCGTCGGAGGGACTGACT CACAACGAGTTCGATTTCGAGTTCCTGGGTAACAAAACAGGGGAGCCGTACGTTGTCCAGACGAATGTGTTCGTCAATGGCGTCGGCAACAGAGAGCAAA GGTTGAACCTTTGGTTCGATCCCACCAAGGATTTCCACCGCTACTCCATCTTCTGGAACCCCAGCCAAGTCATATTTCTGGTGGACGACACTCCGATAAG GCAGCACACGAACTTGGAGCACAAGGGGATCCCATTCCCGAAAGACCAACCAATGGGGGTCTACAGCTCGATCTGGAACGCGGACGACTGGGCGACCCAG GGCGGTTTGGTCAAGACCGACTGGAGCCACGCGCCGTTTGTCGCTTCGTACAAAGGGTTTGAAATCGATGCTTGTGAAAGTCCGGCGACGGCGATGTCGG CGGCTGATCTGACCAAGAAGTGCACCAGCAGTGGCGAGAAGAAGTTTTGGTGGGATGAGCCGACGTTGAGTGGGATGAATGTTCATCAGAGTCATCAGTT GCTTTGGGTTAAGGCCAATCATATGATTTATGATTACTGTAGTGATAACTCGAGGTTCCCTGTTACGCCTGAGGAGTGTCGGCATCACCGCCATTGA
AA sequence Show only first row Show all	>Lus10018503 pacid=23180368 polypeptide=Lus10018503 locus=Lus10018503.g ID=Lus10018503.BGIv1.0 annot-version=v1.0 MAVSISRASLLIALFMGFAALAIVSSAPAKFDDLFQPSWAFDHFVYEGEQLKLKLDNYSGSGFQSKSKYLFGKVTVQIKLVEGDSAGTVTAFYMSSEGLT HNEFDFEFLGNKTGEPYVVQTNVFVNGVGNREQRLNLWFDPTKDFHRYSIFWNPSQVIFLVDDTPIRQHTNLEHKGIPFPKDQPMGVYSSIWNADDWATQ GGLVKTDWSHAPFVASYKGFEIDACESPATAMSAADLTKKCTSSGEKKFWWDEPTLSGMNVHQSHQLLWVKANHMIYDYCSDNSRFPVTPEECRHHRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10018503 [exp]	0	1
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	1.0	0.8946
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	4.9	0.8571
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	8.1	0.8458
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	9.0	0.8595
AT3G23760			unknown protein		Lus10043212 [exp]	10.3	0.8675
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10002789 [exp]	13.0	0.8440
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	13.3	0.8376
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	14.3	0.8471
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	15.9	0.8430
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	17.9	0.8223

Compare expression of checked genes

Lus10018503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.