Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018504 pacid=23180465 polypeptide=Lus10018504 locus=Lus10018504.g ID=Lus10018504.BGIv1.0 annot-version=v1.0 ATGGCCTTTAAAGCCATCCTTCTTCTCCTCCTTCCCCTGATCTTCCCGTTAACCCAAACCACCGCCGATTCCGTACCCACCAAGAAAATCATCCACCATT CAGATCCGCCGTATCCAACACCGGGGAGAGCCCCTACTTCTCAGAAACCATCGGAAGCAGCTGCAGTAGCGGCAGCCGAGGCGCCCAAAGAAGCGGCGGC GGAGGCAGAGGAGGCGAAGGAGCAGAGGAAGCGGCACATTGACAAATCAGTGGCCGGCGGCGGAGTCATACTCGGCGGACTTATCACCGCCGTCTGTATG GCGGTCTTCTGCTACATCCGGGTCACTAGAAAGAGAGACGACGAGCTACTACCCATTGTCATCCCGAATCGGCAGTCGACCGATGCGCTGGTTGTGACCA AGCTGCAGCAGCAATCCGTTGTCGTTTCATCGTCATCTGCGCCGCCGCCGGCTTCTGTTTCTCACTAA
AA sequence Show only first row Show all	>Lus10018504 pacid=23180465 polypeptide=Lus10018504 locus=Lus10018504.g ID=Lus10018504.BGIv1.0 annot-version=v1.0 MAFKAILLLLLPLIFPLTQTTADSVPTKKIIHHSDPPYPTPGRAPTSQKPSEAAAVAAAEAPKEAAAEAEEAKEQRKRHIDKSVAGGGVILGGLITAVCM AVFCYIRVTRKRDDELLPIVIPNRQSTDALVVTKLQQQSVVVSSSSAPPPASVSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09280			unknown protein		Lus10018504 [exp]	0	1
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	4.5	0.9358
AT3G52740			unknown protein		Lus10020614 [exp]	4.9	0.9318
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	8.1	0.9263
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	10.6	0.9251
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10022163 [exp]	12.9	0.8167
					Lus10010397 [exp]	13.0	0.9349
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	13.9	0.9219
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	16.7	0.9180
AT5G13240			transcription regulators (.1)		Lus10034638 [exp]	17.9	0.9290
AT3G57030			Calcium-dependent phosphotries...		Lus10034411 [exp]	21.4	0.9251

Compare expression of checked genes

Lus10018504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.