Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06920 139 / 9e-38 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor (.1) AT1G30800 51 / 4e-07 Fasciclin-like arabinogalactan family protein (.1) AT4G12950 44 / 5e-05 Fasciclin-like arabinogalactan family protein (.1) AT4G29980 42 / 0.0002 unknown protein AT5G40940 42 / 0.0004 FLA20 putative fasciclin-like arabinogalactan protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039717 [exp] 461 / 8e-163 AT5G06920 192 / 5e-58 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10020296 [exp] 362 / 4e-123 AT5G06920 192 / 2e-57 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10023390 [exp] 49 / 3e-06 AT1G30800 116 / 2e-31 Fasciclin-like arabinogalactan family protein (.1) Lus10038414 [exp] 44 / 0.0001 AT1G30800 117 / 5e-32 Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152200 [exp] 197 / 5e-60 AT5G06920 296 / 1e-98 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.008G127500 [exp] 45 / 6e-05 AT5G40940 106 / 7e-26 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.008G128200 [exp] 44 / 0.0001 AT5G40940 174 / 7e-51 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.017G111600 [exp] 42 / 0.0004 AT5G40940 216 / 2e-66 putative fasciclin-like arabinogalactan protein 20 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018505 pacid=23180415 polypeptide=Lus10018505 locus=Lus10018505.g ID=Lus10018505.BGIv1.0 annot-version=v1.0 ATGGATTCCTTCTACCAGAGATGGAAAGCAACGATCTACTTCGCAATCTCTACAGTCCTAGCCTTCACCGCCTTCTCCATAGCTCTACACTCCACCGTCA CCCCACTCCACCCGTCACCTCCTTCCTCTGCTCCTTCCCTCCCACCGCCGGCGACGAATCTTCGCCGCCTCTCCACCAACGCCACGCTCTACCTCCGATA TTCTGGATTCTCCTTCTCTGCATCCTCCCTACTGGCATACCCTGAGACATTCTTCTCCTCCGCAAACTCCACCGTCTTCGTTGTCAAAGACTCCGTCTTG CCCCCCGCCGTCGCCGCATCTCCGTCCTCTGGCGCCTCCGGCGAAGCTCCTCGGTTGATTCTGAAGCAGCTCCTTCTCTACCATACGTCTCCTCTCAGCC TCCCCATGTCGGAGATTCTCAAACTCCCTCCTGGAACGTGCCTCCCGACTCTCGTCGACGGAAAGACACTAGTCGTCACCAAGATCGACGTGGAGAACCG AGCCGCGGAGATCAATGGCGTCAAGATTTCCAATCCCGACGTCGTCATCGAAGGTTCGGTTGTCATCCACGGCGTCAGCGAGCAATTCTCGTCCATGGAC ACCGGCGATGGCAGCGGTCTTATCTCTCCAACCACCTGCGACGCCGCCGCCGGGAGGAACTCGAGCTTACTCACGGACTCCGTCGACTTCAGGAATATCG TCCACTGGTCCAAGATCGTGCGGTCACTCAGCTTAAAGGGGTTCGTCTCATTCGCCGTCGGATTGAACTCTGTACTCGACGGGATTCGCAAAGACTACAA GGACTTGAAATCAGTGACCGTATTCAGTCCACCGGATTTCTCCGTCAGTTCTTCTTCCGCTCCGATGATGGACAGAGTCGTCAGAATTCACATCGTGCCA CGGAGGATTTCCTACGAAGAGCTCATGACCTTGACTAACACGACGTCGTCTCTAAAGACTCTGTTGCCTGGTCATAATCTGGAGGTGAAACTTGAGGCAC TGAAGAATAATGCTACAGCAGGACGATTGACCGTCAATGGAGTCGAGATTCTCAGGCCTGAGATTTTCAAGTCCGATAAGTACATCGTCCATGCAATCTC GAAACCTCTCCGGATCGGTAAGGTTTCGAAGAAGAAATCTAGTAGTTAG
AA sequence Show only first row Show all	>Lus10018505 pacid=23180415 polypeptide=Lus10018505 locus=Lus10018505.g ID=Lus10018505.BGIv1.0 annot-version=v1.0 MDSFYQRWKATIYFAISTVLAFTAFSIALHSTVTPLHPSPPSSAPSLPPPATNLRRLSTNATLYLRYSGFSFSASSLLAYPETFFSSANSTVFVVKDSVL PPAVAASPSSGASGEAPRLILKQLLLYHTSPLSLPMSEILKLPPGTCLPTLVDGKTLVVTKIDVENRAAEINGVKISNPDVVIEGSVVIHGVSEQFSSMD TGDGSGLISPTTCDAAAGRNSSLLTDSVDFRNIVHWSKIVRSLSLKGFVSFAVGLNSVLDGIRKDYKDLKSVTVFSPPDFSVSSSSAPMMDRVVRIHIVP RRISYEELMTLTNTTSSLKTLLPGHNLEVKLEALKNNATAGRLTVNGVEILRPEIFKSDKYIVHAISKPLRIGKVSKKKSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10018505 [exp]	0	1
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	10.1	0.6998
AT1G28240			Protein of unknown function (D...		Lus10001446 [exp]	43.2	0.6840
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10028499 [exp]	62.3	0.6267
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	78.4	0.6537
AT5G36250			Protein phosphatase 2C family ...		Lus10012218 [exp]	78.9	0.6468
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	100.0	0.6217
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10036176 [exp]	113.5	0.6492
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033435 [exp]	117.6	0.6310
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020387 [exp]	123.6	0.6318
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	140.6	0.6364

Compare expression of checked genes

Lus10018505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.