Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16030 228 / 3e-75 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 174 / 1e-54 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 111 / 1e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24480 109 / 5e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 85 / 6e-19 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039718 [exp] 381 / 9e-136 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 115 / 5e-31 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036941 [exp] 112 / 5e-30 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 103 / 2e-26 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014232 [exp] 84 / 2e-18 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10001267 [exp] 82 / 8e-18 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10012217 [exp] 81 / 2e-17 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10022081 [exp] 79 / 9e-17 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10022682 [exp] 58 / 1e-09 AT5G01710 698 / 0.0 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152100 [exp] 262 / 7e-89 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G125300 [exp] 230 / 2e-76 AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G052100 [exp] 103 / 1e-26 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 103 / 1e-26 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G105100 [exp] 72 / 2e-14 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.016G128100 [exp] 72 / 2e-14 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G128800 [exp] 41 / 0.0004 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 40 / 0.0008 AT3G53400 420 / 6e-144 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10018506 pacid=23180456 polypeptide=Lus10018506 locus=Lus10018506.g ID=Lus10018506.BGIv1.0 annot-version=v1.0 ATGGAGAGACGCATAGAGAATTTGCTCAACAGGGTCTCAATCGCCAGCATTGCAATCGCAACCCTGACCCTCCTCATCACCTACCTCCAAATCCCCGAAA CCTGCATTCCACCGGAAACCCCAATCACCAAGCCTCACCAGAGATTCCCTTCCTCCACCTGCGACTCCTCCCTCCACCGTCCGTACCTCTCCAGGGAGAA GAAGAATCTCCGACTATGGTCCTCCAAAGCCTGGACCTCTCAGCTCACTTCCTTCACAAACTTCTTCTCCGATCTTCGATCCTCGGGGCTCCTACACAAC CACACCCGCGTCCTCTGCGTCTCCGCCGGCGCCGGCCACGAGGTCATGGCGCTGCAACAAATCAGAGTTGAGGACGTGATCGGAGTCGAGCTCGTCGAGT CCCTGCCGTTGGTGAGAAAGGCCGATCCAATGAACTTGCCGTTCTTCGACGACGTTTTCGACATTGCCTTCACTGCTCGTTTGGCGGAGGCGTTGTTTCC GAGGAGATTCGTTTCCGAGATGGAGAGGACTGTGGTTACCCGTGGGTACTGCGTTGTCGCCGTGGAAGAGTGTGGGAAGGAGACTGTGGATGAAGTTGTT CGACTGTTTCAGAGGTCCAAGTTCGTCGATGCGAAGAATGTTACACTGATTGGAAAGAAGATGACCAGGATTCGCTTGAGAGTTATCAACAATTCTTCTT CTTCCTAA
AA sequence Show only first row Show all	>Lus10018506 pacid=23180456 polypeptide=Lus10018506 locus=Lus10018506.g ID=Lus10018506.BGIv1.0 annot-version=v1.0 MERRIENLLNRVSIASIAIATLTLLITYLQIPETCIPPETPITKPHQRFPSSTCDSSLHRPYLSREKKNLRLWSSKAWTSQLTSFTNFFSDLRSSGLLHN HTRVLCVSAGAGHEVMALQQIRVEDVIGVELVESLPLVRKADPMNLPFFDDVFDIAFTARLAEALFPRRFVSEMERTVVTRGYCVVAVEECGKETVDEVV RLFQRSKFVDAKNVTLIGKKMTRIRLRVINNSSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16030			S-adenosyl-L-methionine-depend...		Lus10018506 [exp]	0	1
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	3.2	0.8499
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042592 [exp]	13.4	0.8225
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	13.5	0.8480
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	13.8	0.8260
AT5G66770	GRAS		GRAS family transcription fact...		Lus10024014 [exp]	15.5	0.8046
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	22.5	0.8330
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	25.0	0.8129
AT1G16850			unknown protein		Lus10035730 [exp]	28.6	0.7534
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	30.3	0.8252
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	31.0	0.8260

Compare expression of checked genes

Lus10018506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.