Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 257 / 3e-79 HXXXD-type acyl-transferase family protein (.1) AT1G03940 253 / 8e-78 HXXXD-type acyl-transferase family protein (.1) AT3G29670 176 / 4e-49 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29590 162 / 4e-44 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29635 158 / 2e-42 HXXXD-type acyl-transferase family protein (.1) AT5G61160 157 / 6e-42 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39090 155 / 3e-41 HXXXD-type acyl-transferase family protein (.1) AT3G29680 149 / 3e-39 HXXXD-type acyl-transferase family protein (.1) AT5G39080 131 / 8e-33 HXXXD-type acyl-transferase family protein (.1) AT5G39050 125 / 1e-30 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033754 [exp] 481 / 4e-166 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 466 / 4e-160 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 398 / 1e-133 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10039721 [exp] 342 / 2e-115 AT1G03495 89 / 1e-20 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 245 / 1e-74 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 227 / 1e-67 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 170 / 1e-46 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 167 / 2e-45 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 166 / 1e-44 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 367 / 1e-121 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.019G118101 [exp] 367 / 2e-121 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 244 / 3e-74 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 192 / 2e-54 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 189 / 1e-53 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 188 / 3e-53 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 188 / 3e-53 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 187 / 5e-53 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 181 / 9e-51 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 181 / 2e-50 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10018507 pacid=23180362 polypeptide=Lus10018507 locus=Lus10018507.g ID=Lus10018507.BGIv1.0 annot-version=v1.0 ATGGCGAACAGCCACCAGCTGAAACTCCTCCACAGTTTCCAAGTTCCCCCAGCACCTGCAACTTCCGCCGTCGTCCTCCCGCTGACATGTCTCGACTACC CATGGCTATTCTGCAAGCCGATGCAGCGACTCTTCCTGTACGATTTCCCTCACCCAACTCATCACTTCACTCAAAACATCCTCCCGGAGCTTCAACGATC ACTCTCCGTCGCGCTTCACCACTTCTTTCCTCTTTCCGGAAAGCTCGTCTCCCCTACGCCGCCTTGCCTCCCTTACCTTTCCTTCTCCGACGGAGACTCT GTTCCTCTCACCGTCGCAGAGTCGACGGCTGATTTTGACCGGATAGTCGGGAACCATCCGATAAATGCAGGTGGATTGAGTCATCTGGTTCCTAAATTAC CCAATTCGGTTTTGCAAACTGATGGGAGTCGATTGGTTCCGCTACTGGCGATTCAGATCACTCTGTTTCCGGGGCGAGGGATCTCCGTCGGCGCTCAATT CGCCCATATTGTTTCCGACGGCGTGTCGTTTCACCACTTTTTGAAAATGTGGGCTTATCTTTGCAAGAAAACATCACTCGAGGAGGATTTGGATGAGGCT CTTCCGTTGCCGTCTCACGAAAGGGAAAGGGAAATCATCCGGCGAGCTTATCCAGGTCTTGAAGCGGCGCTGGCCAGCCAGTGGTTCGGACTCGGGTCGG GCTGGGACTTCGATTCCGGGCGAGCCGATTTAACCGGAAGCGATAAGGTTCGGTTGACTCTCGTGATAACCCGGCCGATGATAGAACGGATTAAACTGTG GATCCGGGGAACCAATCCGACGCCATTTCATTTATCTGCTTTCGTGGTGACGTCAGCTTTGCTCTGGACTCCAATGATCAAATCCTTTGCGATCGGAGAG GAATCCGACGATTCGGAAACGCTCTACCACCTCAATTTCGTCGCCGATTGCCGGCACCGGTTAGGACTCGACGGATTATCAGCATCCTACTTCGGGAACT GCCTAGCACACTATTACGTGTCGATGAAAAGAGGGGAGGCGGCGGATGTGGCGGCAACGGCGGAAGCGATTGGGAAGAAGGTGGAAGAGCTGACCGATGG CAGAGGGGGTTTGTTGTTGAAGGGGGCGGAGAGGTGGGTGCCGGAGTGGAATGAGCTGGCGGAAGGAGGGAGGATGGTTACGATAGCTGGGTCGCCGAAG TTGAGAGCTTACGATACAGATTTTGGGTGGGGGAAGCCGAGGAAGAGCGAGGTGGTTCATTTGGCCGACGGCAAGGGGATTATAGCGCTGTGCGATAGCG GAGATGGAAGCGGCGGCGTTGAGGTCGGGTTGGCTATGGAGAGGAGTAAGATGGAGGTTTTCAGCGGGTTATTTCAAGAGTTTCTCGGCCAACCTCGCTG TCCAGAGTTGGAGAAGAGACGAAACGATTCAGAGATGGGCAATGGAAGAAGATTCAGCGGAGGCGGCGGTAGTGGCCGACGGAGGAACCAATCACAGCTC AGGCAAGACGTGGAAGCGTGCCGGAAGAAAGACTCCACCGCCGACGATATCGTCCAACTTCTCCGCCCGCAGTCCCCCATCTACGGCCGGATGAAACACC AAGTCCTAGCTAGAAACGTCCGCCAAATCATCGAACCTCCACCGTCACAGTTCTGTAAGAAACTCCGGAGACCTTGGGAAGAAGAAGAGGAGGAAGAATA CGATTATGACGAAGTATGA
AA sequence Show only first row Show all	>Lus10018507 pacid=23180362 polypeptide=Lus10018507 locus=Lus10018507.g ID=Lus10018507.BGIv1.0 annot-version=v1.0 MANSHQLKLLHSFQVPPAPATSAVVLPLTCLDYPWLFCKPMQRLFLYDFPHPTHHFTQNILPELQRSLSVALHHFFPLSGKLVSPTPPCLPYLSFSDGDS VPLTVAESTADFDRIVGNHPINAGGLSHLVPKLPNSVLQTDGSRLVPLLAIQITLFPGRGISVGAQFAHIVSDGVSFHHFLKMWAYLCKKTSLEEDLDEA LPLPSHEREREIIRRAYPGLEAALASQWFGLGSGWDFDSGRADLTGSDKVRLTLVITRPMIERIKLWIRGTNPTPFHLSAFVVTSALLWTPMIKSFAIGE ESDDSETLYHLNFVADCRHRLGLDGLSASYFGNCLAHYYVSMKRGEAADVAATAEAIGKKVEELTDGRGGLLLKGAERWVPEWNELAEGGRMVTIAGSPK LRAYDTDFGWGKPRKSEVVHLADGKGIIALCDSGDGSGGVEVGLAMERSKMEVFSGLFQEFLGQPRCPELEKRRNDSEMGNGRRFSGGGGSGRRRNQSQL RQDVEACRKKDSTADDIVQLLRPQSPIYGRMKHQVLARNVRQIIEPPPSQFCKKLRRPWEEEEEEEYDYDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10018507 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001837 [exp]	40.8	0.7839
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042664 [exp]	41.5	0.7837
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10000108 [exp]	44.5	0.7881
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	48.2	0.7502
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	53.8	0.7849
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030603 [exp]	66.6	0.7783
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10016360 [exp]	67.8	0.7683
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10009940 [exp]	77.6	0.7785
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001951 [exp]	83.2	0.7262
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	85.8	0.7756

Compare expression of checked genes

Lus10018507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.