Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 355 / 1e-117 Protein with RNI-like/FBD-like domains (.1) AT1G66290 76 / 2e-14 F-box/RNI-like superfamily protein (.1) AT5G02930 73 / 2e-13 F-box/RNI-like superfamily protein (.1) AT5G02920 66 / 7e-12 F-box/RNI-like superfamily protein (.1) AT5G27750 67 / 2e-11 F-box/FBD-like domains containing protein (.1) AT5G22610 61 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59200 61 / 2e-09 F-box/RNI-like superfamily protein (.1) AT3G28410 60 / 2e-09 F-box/RNI-like superfamily protein (.1) AT3G26922 59 / 3e-09 F-box/RNI-like superfamily protein (.1) AT5G22730 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029357 [exp] 71 / 5e-13 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 68 / 6e-12 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 67 / 3e-11 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10006970 [exp] 64 / 8e-11 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1) Lus10037440 [exp] 64 / 2e-10 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10008295 [exp] 60 / 2e-10 AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10032255 [exp] 62 / 3e-10 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10024701 [exp] 58 / 4e-10 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 59 / 3e-09 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151200 [exp] 474 / 5e-164 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.001G322900 [exp] 78 / 4e-15 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104100 [exp] 70 / 1e-12 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 70 / 1e-12 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.015G002100 [exp] 69 / 1e-12 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 67 / 8e-12 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 67 / 2e-11 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G011200 [exp] 64 / 7e-11 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 62 / 3e-10 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024600 [exp] 61 / 1e-09 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain CL0271 [flax] [poplar] PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10018509 pacid=23180389 polypeptide=Lus10018509 locus=Lus10018509.g ID=Lus10018509.BGIv1.0 annot-version=v1.0 ATGGAAACCCGATCAGCAAAACGGAAAAGGCAGCGACTTTGCTTCGCCGCCGACGAAACCCTGCGCATCGACATGATCACCGACCTCCCTGACGCCATCC TCCACCATATCTTGTCTTACCTCCCGATCAAGTCCATCGCCCAAACCTCCACTCTCTCCAAACGCTGGAGGACAATCTGGTACTCCTTCCCGGATCTCGA TTTCACCACCGCCTCCGCCGCCGGGACGGTGGCGGCGGCGTCAATCGCCACCGTCCTCTCTCACCGTCGGAACAAGAACACCACCGAAAACAACCTCCGA TCACTCCGCTTCTCTGCCTCCCGGCTTGCATTCTCAGCCCTCAACTCCATCATCCGTCTCGCAGTCCGCCACCGCGTCCAGAACCTCGACGTCGAGGTAT CGACAAACGACTTCTTCAACTTCCCGAGATCCCTGATCTCAAGCGAGACGTTAAGAAAATTCAAATTGAAATCGACCTCCCCTGGATTCCGCCTCCTCCC TTCTTCAATCATGTCCCGCGGATTCCAATCCCTAATTTCGCTTTCCCTATCGCTTATCAAATTCACCGAACATCCTTATTTAACAGATCTATTCACTGGG AATTCCTTTCCGTGTCTGAAAACGCTGGATCTGGACAAGTGTCACGAATTGAAGCGATTGAAAGTCTCCTGCCAGGGGATTGAACGATTCTCGTTGAGTG AGTGTTACCATCTGCGTGAGCTGGAGATTTGCTGCAGGGGATTGGAGACGCTGAGAGTTGTGAGCTGCTTCGACGCTTACTCCGGCGGAGATAAGGAGTC GACGTCGGTGAGGATTCGTAATGGGGGACGGATTAAGGCGGTGGAGTGGGAGGTGAACGCCGTTACGGGGAGATGTGAGGTGGATGAGCTGACGGCGGTG AAGGAAGCGGCGATTGGGTTCTTTATGGAGTATTACGAGGAGATTAGTGCGGTGAAAATTGAGAGCGTTTGCAGCTTCTTGTGTGGATTCTCGCGCGCCG ATGCTTTGACTCTCGGAAGTCAATGTATTGAGATACTATCGAACAGGAAGGATTCAGCGCATTACAGCAAGAACCCATTATTCAGCAACGTTCAACTACT GGAGCTGCACACAGGCTTCAACAAGAAGAACGTTTCAGGGCTTGCATTCCTCTTCAAAAGCTCGCCCAATTTGCAGACCCTCGTACTCAAGATCCACAAC GACAACAAGATCGAAAGACGGCAATGGAACAGGGACTTGTGGGACGCGTCGTCGAGCTCGGAGCAAGAGCAGTACTGGGAGTCTCAGGTCGAAAACCTGA AGCCATTCCTGAACAGTCTGAAAGCAGTGAAGATCAATGGCTTCTTGGAGTACGAGAACGAAGTTAGCTTAGCCAAGTTCTTGCTCAAGCATTGCAAGCA CTTGCAAGAGATGACACTCTCGACTCCTCGCCATTGCAACTATAGGGATAGCTTGAGGAGACAGAAAGTTAGGTCTCAGATGATGGGCTTCTCCTGGGCT TCCTCTAACGCCAAGTTCTCCTTCCTATGA
AA sequence Show only first row Show all	>Lus10018509 pacid=23180389 polypeptide=Lus10018509 locus=Lus10018509.g ID=Lus10018509.BGIv1.0 annot-version=v1.0 METRSAKRKRQRLCFAADETLRIDMITDLPDAILHHILSYLPIKSIAQTSTLSKRWRTIWYSFPDLDFTTASAAGTVAAASIATVLSHRRNKNTTENNLR SLRFSASRLAFSALNSIIRLAVRHRVQNLDVEVSTNDFFNFPRSLISSETLRKFKLKSTSPGFRLLPSSIMSRGFQSLISLSLSLIKFTEHPYLTDLFTG NSFPCLKTLDLDKCHELKRLKVSCQGIERFSLSECYHLRELEICCRGLETLRVVSCFDAYSGGDKESTSVRIRNGGRIKAVEWEVNAVTGRCEVDELTAV KEAAIGFFMEYYEEISAVKIESVCSFLCGFSRADALTLGSQCIEILSNRKDSAHYSKNPLFSNVQLLELHTGFNKKNVSGLAFLFKSSPNLQTLVLKIHN DNKIERRQWNRDLWDASSSSEQEQYWESQVENLKPFLNSLKAVKINGFLEYENEVSLAKFLLKHCKHLQEMTLSTPRHCNYRDSLRRQKVRSQMMGFSWA SSNAKFSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03220			Protein with RNI-like/FBD-like...		Lus10018509 [exp]	0	1
					Lus10000761 [exp]	3.5	0.6292
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10030278 [exp]	5.7	0.6408
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	7.3	0.6398
					Lus10017410 [exp]	7.4	0.6268
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10037499 [exp]	13.1	0.5551
AT2G33320			Calcium-dependent lipid-bindin...		Lus10003570 [exp]	13.9	0.6067
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	28.3	0.6380
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	30.7	0.5703
AT3G07120			RING/U-box superfamily protein...		Lus10038180 [exp]	41.0	0.5302
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014874 [exp]	41.9	0.6212

Compare expression of checked genes

Lus10018509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.